GitHub
whisperxtranscription4researchers
This repository contains a Jupyter notebook for qualitative researchers to transcribe, diarize speakers, and convert audio or video files into various text formats (csv, txt, json, & vtt).
duracketal25-forcingworkshopsummary
A meeting report, summarizing key takeaways from the October 2025 workshop "Pathway to regular and sustained delivery of climate forcing datasets"
notiflyer
an inspiring and refreshing new way of sending KPIs, alerts, or simple tabular data as emails
django2pydantic
Django2pydantic is the most complete library for converting Django ORM models to Pydantic models
robincar
ROBust INference for Covariate Adjustment in Randomized clinical trials
potjansdiesmann2014
Large scale model of cortical network from Potjans and Diesmann, 2014
hpc-springschool
Git training during HPC spring school using MSc code for plotting statistical data
likelihoodbasedprofilewiseanalysis.jl
Julia package which implements and explores the Likelihood-based Profile Wise Analysis workflow for uncertainty quantification
a-classical-proof-of-the-riemann-hypothesis-via-self-adjoint-spectral-theory
Formal repository for “A Classical Proof of the Riemann Hypothesis via Self-Adjoint Spectral Theory” by Lawrence Ip. Contains manuscript and philosophical context via the Spectral Unity Theorem.
sars-cov-2-mpro-drug-discovery
A complete virtual screening + QSAR modeling + ADME profiling project
security-datasets-for-testing
A set of security datasets for testing of tools and algorithms
euromix-to-sbml
Antimony/SBML re-implementation of the EuroMix Generic PBK model.
nfdi4ingscientificworkflowrequirements
This is a repository to discuss, collect and store the requirements for scientific workflow systems
https://github.com/barahona-research-group/mcf
Code for the paper "Analysing Multiscale Clusterings with Persistent Homology" by Juni Schindler and Mauricio Barahona.
awesome-story-generation
This repository collects an extensive list of awesome papers about Story Generation / Storytelling, exclusively focusing on the era of Large Language Models (LLMs).
psmi
An implementation of Pointwise Sliced Mutual Information (PSMI) for machine learning
nedextract
Extract information on persons and organisation from Dutch PDF files
cocoa-diseases
Cocoa Diseases (YOLOv4): Monilia & Phytophthora (Diseases in cocoa pods)
nfmicrofinder
This pipeline aids the curation of bird genome assemblies by identifying putative microchromosome scaffolds and moving them to the start of the genome assembly FASTA file.
Causality-in-Trustworthy-Machine-Learning
The repository contains lists of papers on causality and how relevant techniques are being used to further enhance deep learning era computer vision solutions.
horizon-dataset
The open-sourced event forecasting dataset used to evaluate Horizon and similar systems.
https://github.com/diging/virtual-spaces-docker
Docker container and docker compose for Virtual Spaces 2.0
thereminq-bonsai
ThereminQ - Bonsai QuantOPS : create, edit and deploy Bonsai visualisations in an interactive 3D desktop environment
https://github.com/giorginolab/biozernike
Protein structure descriptors and alignment based on 3D Zernike moments.
https://github.com/giorginolab/polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
osep
The code used in arXiv.2406.10206 to find unitaries that maximize the operator space entangling power.
quantum-cryptography
Experimental data and code from the semester 5 laboratory
https://github.com/giorginolab/evobind
In silico directed evolution of peptide binders with AlphaFold
https://github.com/giorginolab/vmd_rmsdttnc
RMSD trajectory tool enhanced with native contacts
https://github.com/crsu-apps/metapairwise
An interactive web-based tool for analyzing, interrogating, and visualizing pairwise meta-analyses using R-shiny.
ni-chaos
Data and Matlab code to reproduce "Noise-induced chaos: A conditioned random dynamics perspective"
passive-radiometer-trace-data
Trace data of satellite radiometer data colleted during the month of September 2023
model-selection-sim-study
Simulation study of various variable selection techniques. Intended to examine the bias in parameter estimation in the context of causal health. In particular, we grapple with confounding, unseen confounding and bias amplification.
gs-svocc
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
df-dn-paper
Conceptual & empirical comparisons between decision forests & deep networks
https://github.com/diging/spring-examples
A project to demonstrate simple workflows, etc.
rewl_simulator
A general simulator for classical thermodynamical systems based on the replica-exchange Wang Landau Monte Carlo sampling algorithm.
