mmdetection_test • Rank 7.6 • Science 64%

cutesv • Rank 12.6 • Science 59%

Long read based human genomic structural variation detection with cuteSV

rapidtide • Rank 12.6 • Science 59%

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

https://github.com/cheminfo/multiplet-analysis • Rank 12.6 • Science 59%

Analyse multiplet

cartorio • Rank 4.6 • Science 67%

A wrapper on the logging module for Python that provides a simple and easy to use interface for logging.

interactive_data_editor • Rank 4.6 • Science 67%

A Software to interactively edit data in a graphical manner

soccernet-calibration-sportlight • Rank 4.6 • Science 67%

SoccerNet@CVPR | 1st place solution for Camera Calibration Challenge 2023

stringdist • Rank 22.6 • Science 49%

String distance functions for R

scvi-tools • Rank 22.6 • Science 49%

Deep probabilistic analysis of single-cell and spatial omics data

Cylc — Peer-reviewed • Rank 12.6 • Science 59%

Cylc: A Workflow Engine for Cycling Systems - Published in JOSS (2018)

vptstools • Rank 4.6 • Science 67%

Python library to transfer and convert vertical profile time series data

sithom • Rank 7.5 • Science 64%

A package for shared utility scripts.

chess_bead • Rank 4.5 • Science 67%

Package for the both chess and Chinese poetry game. Inspired by Das Glasperlenspiel by Hermann Hesse.

mikrokondo • Rank 4.5 • Science 67%

A simple pipeline for bacterial assembly and quality control

sdds • Rank 12.5 • Science 59%

Python 3 package to handle SDDS files

sasrec.pytorch • Rank 7.5 • Science 64%

PyTorch(1.6+) implementation of https://github.com/kang205/SASRec

bandle • Rank 12.5 • Science 59%

An R package for Bayesian analysis of differential localisation experiments

qtl2 • Rank 12.5 • Science 59%

QTL analysis software for high-dimensional data and complex cross designs

nbproject • Rank 14.5 • Science 57%

Light-weight Jupyter notebook tracker.

ecourts • Rank 4.5 • Science 67%

Python library to help scrape Indian Court Orders from the ecourts website

coproid • Rank 4.5 • Science 67%

Coprolite host Identification pipeline

ccsd • Rank 7.5 • Science 64%

Combinatorial Complex Score-based Diffusion model using stochastic differential equations

TreeSearch • Rank 12.5 • Science 59%

R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria

https://github.com/catalyst-cooperative/ferc-xbrl-extractor • Rank 12.5 • Science 59%

A tool for converting FERC filings published in XBRL into SQLite databases

gnina • Rank 12.5 • Science 59%

A deep learning framework for molecular docking

io.joern:c2cpg_2.13 • Rank 17.5 • Science 54%

Open-source code analysis platform for C/C++/Java/Binary/Javascript/Python/Kotlin based on code property graphs. Discord https://discord.gg/vv4MH284Hc

street-network-models • Rank 4.5 • Science 67%

Street network models and indicators for every urban area in the world

pypolyline • Rank 4.5 • Science 67%

Fast Google Polyline encoding and decoding using a Rust binary

metagenomics-analysis • Rank 7.5 • Science 64%

Data Processing and Visualization for Metagenomics

nhdplusTools • Rank 14.4 • Science 57%

See official repository at: https://code.usgs.gov/water/nhdplusTools

anastruct • Rank 17.4 • Science 54%

2D structural analysis in Python

mrvalidation • Rank 4.4 • Science 67%

Package contains routines to prepare data for validation exercises.

dea_limma • Rank 4.4 • Science 67%

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

readfish • Rank 12.4 • Science 59%

CLI tool for flexible and fast adaptive sampling on ONT sequencers

tfs-pandas • Rank 12.4 • Science 59%

Python package to handle TFS files

jekyll-pages-novice • Rank 7.4 • Science 64%

Building Websites with Jekyll & GitHub Pages.

loraenergysim • Rank 4.4 • Science 67%

LoRa Network Simulator to Monitor Energy Consumption

perbase • Rank 17.4 • Science 54%

Per-base per-nucleotide depth analysis

dla-future-fortran • Rank 4.4 • Science 67%

Fortran interface for DLA-Future

https://github.com/sktime/pytorch-forecasting • Rank 25.4 • Science 46%

Time series forecasting with PyTorch

grass • Rank 12.4 • Science 59%

GRASS - free and open-source geospatial processing engine

aggregate • Rank 12.4 • Science 59%

Tools for creating and working with aggregate probability distributions.

who-owns-mass-processing • Rank 4.4 • Science 67%

Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.

Delira — Peer-reviewed • Rank 12.4 • Science 59%

Delira: A High-Level Framework for Deep Learning in Medical Image Analysis - Published in JOSS (2019)

tango • Rank 17.4 • Science 54%

Organize your experiments into discrete steps that can be cached and reused throughout the lifetime of your research project.

https://github.com/epistasislab/tpot2 • Rank 12.4 • Science 59%

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

huspacy • Rank 7.3 • Science 64%

HuSpaCy: industrial-strength Hungarian natural language processing

symbolicai • Rank 17.3 • Science 54%

A neurosymbolic perspective on LLMs

exllsm-circuit-reconstruction • Rank 4.3 • Science 67%

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

pointedsdms • Rank 12.3 • Science 59%

Wrapper function for 'inlabru' for modeling species distribution models from disparate datasets.

NbodyGradient • Rank 7.3 • Science 64%

N-body integrator computes derivatives with respect to initial conditions for TTVs, RV, Photodynamics & more

mllmcelltype • Rank 12.3 • Science 59%

🏆 #1 Multi-LLM consensus framework | 550+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation tool

giscoR • Rank 14.3 • Science 57%

Download geospatial data from GISCO API - Eurostat

pennylane • Rank 25.3 • Science 46%

PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Built by researchers, for research.

exactextract • Rank 17.3 • Science 54%

Fast and accurate raster zonal statistics

vegas • Rank 12.3 • Science 59%

Adaptive multidimensional Monte Carlo integration.

flitc-application • Rank 4.3 • Science 67%

A data-driven deep learning based fault diagnosis application for radial, active distribution grids

pyelli • Rank 12.3 • Science 59%

An open source ellipsometry analysis tool for reproducible and comprehensible building of optical models.

pyscreener — Peer-reviewed • Rank 12.3 • Science 59%

pyscreener: A Python Wrapper for Computational Docking Software - Published in JOSS (2022)

powergenome • Rank 12.3 • Science 59%

A tool to quickly and easily create inputs for power systems models

mmsbm • Rank 4.2 • Science 67%

Mixed Membership Stochastic Block Models

ER-Evaluation — Peer-reviewed • Rank 4.2 • Science 67%

ER-Evaluation: End-to-End Evaluation of Entity Resolution Systems - Published in JOSS (2023)

moire-lattice-generator • Rank 4.2 • Science 67%

Simple python code to interactively generate visualizations of moire patterns of hexagonal lattices such as magic angle bilayer graphene.

abmgpu • Rank 4.2 • Science 67%

Agent Based Model on GPU using CUDA 12.2.1 and OpenGL 4.5 (CUDA OpenGL interop) on Windows/Linux

skosprovider_rdf • Rank 4.2 • Science 67%

Skosprovider implementation backed by RDF

blackmarblepy • Rank 12.2 • Science 59%

Georeferenced Rasters and Statistics of Nightlights from NASA Black Marble

check-shapes • Rank 17.2 • Science 54%

Library for annotating and checking tensor shapes.

fitlins • Rank 12.2 • Science 59%

Fit Linear Models to BIDS Datasets

resample • Rank 7.2 • Science 64%

Randomization-based inference in Python

scout-browser • Rank 17.2 • Science 54%

VCF visualization interface

ckanext-graph • Rank 9.2 • Science 62%

A CKAN extension that adds a graph view for resources.

lst-bench • Rank 7.2 • Science 64%

LST-Bench is a framework that allows users to run benchmarks specifically designed for evaluating Log-Structured Tables (LSTs) such as Delta Lake, Apache Hudi, and Apache Iceberg.

lrebench • Rank 4.2 • Science 67%

[EMNLP 2022 Findings] Towards Realistic Low-resource Relation Extraction: A Benchmark with Empirical Baseline Study

span-marker • Rank 17.2 • Science 54%

SpanMarker for Named Entity Recognition

python-ternary • Rank 20.2 • Science 51%

:small_red_triangle: Ternary plotting library for python with matplotlib

org.bridgedb.examples • Rank 12.2 • Science 59%

The BridgeDb Library source code

jax • Rank 17.2 • Science 54%

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

konstraints • Rank 4.2 • Science 67%

gemma.R • Rank 14.2 • Science 57%

An R wrapper for the Gemma RESTful API

puniform • Rank 12.2 • Science 59%

https://github.com/astro-informatics/s2let • Rank 12.2 • Science 59%

Fast wavelet transforms on the sphere.

python-ecology-lesson-es • Rank 7.2 • Science 64%

Análisis y visualización de datos usando Python

gtsummary • Rank 22.2 • Science 49%

Presentation-Ready Data Summary and Analytic Result Tables

oil-riggery_yolov5 • Rank 7.2 • Science 64%

dantro • Rank 4.2 • Science 67%

dantro is a Python package to handle, transform, and visualize hierarchically structured data. Docs @ https://dantro.readthedocs.io — NOTE: This repository is a READ-ONLY-MIRROR of the actual development repository; for open issues and MRs, see there:

wombat • Rank 14.2 • Science 57%

Windfarm Operations & Maintenance cost-Benefit Analysis Tool

arbor • Rank 17.2 • Science 54%

The Arbor multi-compartment neural network simulation library.

cccl • Rank 17.2 • Science 54%

CUDA Core Compute Libraries

simpleworkflows.jl • Rank 4.1 • Science 67%

A simple workflow engine powered by Julia

papaja • Rank 17.1 • Science 54%

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

epialleleR • Rank 12.1 • Science 59%

Fast, epiallele-aware methylation caller and reporter — an R/Bioconductor package

de.lmu.ifi.dbs.elki • Rank 17.1 • Science 54%

ELKI Data Mining Toolkit

rsatoolbox • Rank 17.1 • Science 54%

Python library for Representational Similarity Analysis

rcarb • Rank 12.1 • Science 59%

R package 'RCarb'

instrain • Rank 12.1 • Science 59%

Bioinformatics program inStrain

alfred-bibtex-citation-picker • Rank 7.1 • Science 64%

Picker for markdown-based citations and lightweight reference manager for BibTeX libraries.

tei-reader • Rank 4.1 • Science 67%

TEI Reader Python Library

opensimplex-loops • Rank 4.1 • Science 67%

Python library to generate seamlessly-looping animated images and closed curves, and seamlessy-tileable images. Based on 4D OpenSimplex noise.

tts-mos-test-mturk • Rank 4.1 • Science 67%

Command-line interface (CLI) and Python library to evaluate text-to-speech (TTS) mean opinion score (MOS) studies done on Amazon Mechanical Turk (MTurk). The calculation of the confidence intervals is done in the same manner as described in (Ribeiro et al., 2011).

covid-19-todesfaelle_in_deutschland • Rank 4.1 • Science 67%

Im Datensatz 'COVID-19-Todesfälle in Deutschland' werden die Todesfälle in Bezug auf COVID-19 in Deutschland bereitgestellt. Darüber hinaus wird neben der Anzahl der übermittelten Todesfälle der Fall-Verstorbenen-Anteil berechnet. Angaben zum Tod zählen zu den melde- und übermittlungspflichtigen Inhalten. Bei der Ermittlung von Todesfällen und d...