Polymers • Rank 11.3 • Science 57%

Polymers Modeling Library

scikit-survival • Rank 22.3 • Science 46%

Survival analysis built on top of scikit-learn

@stdlib/random-base-minstd • Rank 11.3 • Science 57%

A linear congruential pseudorandom number generator (LCG) based on Park and Miller.

https://github.com/ornladios/adios2 • Rank 19.3 • Science 49%

Next generation of ADIOS developed in the Exascale Computing Program

Swiftest — Peer-reviewed • Rank 14.3 • Science 54%

Swiftest: An \textit{N}-body Integrator for Gravitational Systems - Published in JOSS (2023)

com.eldrix/hermes • Rank 14.3 • Science 54%

A library and microservice implementing the health and care terminology SNOMED CT with support for cross-maps, inference, fast full-text search, autocompletion, compositional grammar and the expression constraint language.

stress-ng • Rank 14.3 • Science 54%

This is the stress-ng upstream project git repository. stress-ng will stress test a computer system in various selectable ways. It was designed to exercise various physical subsystems of a computer as well as the various operating system kernel interfaces.

iml — Peer-reviewed • Rank 19.2 • Science 49%

iml: An R package for Interpretable Machine Learning - Published in JOSS (2018)

soiltestcorr • Rank 9.2 • Science 59%

Soil Test Correlation & Calibration in R

obook • Rank 9.2 • Science 59%

OBO Organized Knowledge: Training materials for becoming an OBO engineer

aif360 • Rank 22.2 • Science 46%

A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.

Unfold • Rank 9.2 • Science 59%

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

eval-suite • Rank 9.2 • Science 59%

[ACL 2024] User-friendly evaluation framework: Eval Suite & Benchmarks: UHGEval, HaluEval, HalluQA, etc.

randomNames • Rank 14.2 • Science 54%

Function to generate random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names.

weaviate • Rank 24.2 • Science 44%

Weaviate is an open-source vector database that stores both objects and vectors, allowing for the combination of vector search with structured filtering with the fault tolerance and scalability of a cloud-native database​.

itslive • Rank 4.2 • Science 64%

NOTE: this book is no longer maintained. Please go to 'Cloud-native geospatial data cube workflows,' linked below, instead.

pronto • Rank 19.2 • Science 49%

A Python frontend to (Open Biomedical) Ontologies.

microbiome • Rank 9.2 • Science 59%

microbiome R package

ClustAssess • Rank 11.2 • Science 57%

Tools for assessing clustering robustness

upit • Rank 9.2 • Science 59%

A fastai/PyTorch package for unpaired image-to-image translation.

enzyme-gpu-tests • Rank 4.2 • Science 64%

This repo contains the benchmarks for Enzyme on GPU's

flame • Rank 11.2 • Science 57%

Modeling framework for eTRANSAFE project

CatastRo • Rank 11.2 • Science 57%

R package to query Sede Electrónica del Catastro (Spain)

neutronics_material_maker • Rank 14.2 • Science 54%

A tool for making reproducible materials and standardizing use across several neutronics codes

pycalib • Rank 4.2 • Science 64%

Python library for classifier calibration

@stdlib/random-base-binomial • Rank 11.1 • Science 57%

Binomial distributed pseudorandom numbers.

hires-literature • Rank 4.1 • Science 64%

All the literature on high-resolution spectroscopy of exoplanet atmospheres — theory and observation.

fmriprep • Rank 19.1 • Science 49%

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

proteomics-sample-metadata • Rank 9.1 • Science 59%

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

gap • Rank 14.1 • Science 54%

Main development repository for GAP - Groups, Algorithms, Programming, a System for Computational Discrete Algebra

celeritas • Rank 9.1 • Science 59%

Celeritas is a new Monte Carlo transport code designed to accelerate scientific discovery in high energy physics by improving detector simulation throughput and energy efficiency using GPUs.

https://github.com/clima/climaocean.jl • Rank 11.1 • Science 57%

🌎 Regional-to-global coupled ocean and sea ice simulations based on Oceananigans

ldkit • Rank 11.1 • Science 57%

LDkit - Linked Data query toolkit for TypeScript developers

django-ddm • Rank 11.1 • Science 57%

Data Donation Module: A Django application to setup and manage data donation projects.

ucomp-pipeline • Rank 6.1 • Science 62%

Data processing pipeline for UCoMP

public_open_source_data_science • Rank 1.1 • Science 67%

A repository of open source data science projects for social good

jurisprudencia_con_genero • Rank 1.1 • Science 67%

master-project • Rank 1.1 • Science 67%

Master Thesis Project at LARA (EPFL)

giantkelpdynamics • Rank 1.1 • Science 67%

Dynamical model for the motion of giant kelp (Macrocystis pyrifera). Accompanies "A model of tidal flow and tracer release in a giant kelp forest"(Strong-Wright and Taylor, In review)

ncse-seminar-2022 • Rank 1.1 • Science 67%

National Centre for Statistical Ecology seminar, Feb 9th, 2022

sesgos_llm • Rank 1.1 • Science 67%

¿Cómo “se equivocan” los modelos LLM?

airs • Rank 1.1 • Science 67%

The AIRS Code Collection enables data processing and analysis for remote sensing observations captured by NASA's Atmospheric InfraRed Sounder.

arch2019_re • Rank 1.1 • Science 67%

Repeatability Evaluation package for the ARCH2019 Competition

desarrollo_sector_pesquero_acuicola • Rank 1.1 • Science 67%

Este trabajo identifica y analiza las oportunidades más relevantes para la evolución futura del sector pesquero

cifar-10g • Rank 1.1 • Science 67%

Stylised images in CIFAR-10 categories to test generalisation

pytacite • Rank 1.1 • Science 67%

A flexible and lightweight Python interface to the DataCite database (datacite.org)

minesweepears • Rank 1.1 • Science 67%

MineSweepears Island is a hex-based puzzle game inspired by Minesweeper, where players use spatial audio cues to detect hidden mines. Created for Ludum Dare 32, the game blends strategy with innovative sound-based gameplay.

macrophage-regulation • Rank 1.1 • Science 67%

Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation

dd3d-eit • Rank 1.1 • Science 67%

Data-Driven 3D Reconstruction for Electrical Impedance Tomography

sphinxcontrib-matlabdomain • Rank 17.1 • Science 51%

A Sphinx extension for documenting Matlab code

nearoptimalalternatives.jl • Rank 4.1 • Science 64%

A package implementing modelling to generate alternatives (MGA) to find near optimal alternatives to the optimal solution.

sc2-benchmark • Rank 4.1 • Science 64%

[TMLR] "SC2 Benchmark: Supervised Compression for Split Computing"

streamflow • Rank 14.1 • Science 54%

StreamFlow Workflow Manager

Eclipse Golo — Peer-reviewed • Rank 9.1 • Science 59%

Eclipse Golo - Published in JOSS (2016)

atlas • Rank 9.1 • Science 59%

A library for numerical weather prediction and climate modelling

PoissonRandom • Rank 14.1 • Science 54%

Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)

neko • Rank 9.1 • Science 59%

/ᐠ. ｡.ᐟ\ᵐᵉᵒʷˎˊ˗

https://github.com/bashtage/linearmodels • Rank 22.1 • Science 46%

Additional linear models including instrumental variable and panel data models that are missing from statsmodels.

data-organisation-for-better-analysis • Rank 4.1 • Science 64%

Data Organization in Spreadsheets to Ease Further Processing

alpaqa • Rank 14.0 • Science 54%

Library for nonconvex constrained optimization using the augmented Lagrangian method and the matrix-free PANOC algorithm.

acro • Rank 11.0 • Science 57%

Tools for the Semi-Automatic Checking of Research Outputs. These are tools for researchers to use as drop-in replacements for common analysis commands.

NLPModelsJuMP • Rank 11.0 • Science 57%

Create NLPModels with JuMP

fenics-dolfinx • Rank 14.0 • Science 54%

Next generation FEniCS problem solving environment

https://github.com/aureme/esmecata • Rank 9.0 • Science 59%

From taxonomic affiliations to annotated consensus proteomes using UniProt database.

pliers • Rank 14.0 • Science 54%

Automated feature extraction in Python

gcm_toolkit • Rank 4.0 • Science 64%

Tools for GCM postprocessing

binaryai • Rank 14.0 • Science 54%

Get results of binaryai.cn using our SDK

extra-bigint • Rank 14.0 • Science 54%

A BigInt can represent whole numbers larger than 2⁵³ - 1.

fgsea • Rank 9.0 • Science 59%

Fast Gene Set Enrichment Analysis

@stdlib/blas-ext-base-gsumpw • Rank 11.0 • Science 57%

Calculate the sum of strided array elements using pairwise summation.

tokenizers • Rank 14.0 • Science 54%

💥 Fast State-of-the-Art Tokenizers optimized for Research and Production

neptune-client • Rank 24.0 • Science 44%

📘 The experiment tracker for foundation model training

nempi • Rank 11.0 • Science 57%

Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi

ohsome • Rank 10.9 • Science 57%

Python bindings for the ohsome API

plantcv • Rank 18.9 • Science 49%

Plant phenotyping with image analysis

zntrack • Rank 13.9 • Science 54%

Create, visualize, run & benchmark DVC pipelines in Python & Jupyter notebooks.

https://github.com/biocore/q2-greengenes2 • Rank 8.9 • Science 59%

A QIIME 2 plugin for interaction with the Greengenes2 database

pybop • Rank 13.9 • Science 54%

A parameterisation and optimisation package for battery models.

crmPack • Rank 18.9 • Science 49%

Object-Oriented Implementation of CRM Designs

BioCro • Rank 18.9 • Science 49%

https://github.com/ydataai/ydata-synthetic • Rank 18.9 • Science 49%

Synthetic data generators for tabular and time-series data

@explorable-viz/fluid • Rank 13.9 • Science 54%

Data-linked visualisations

gstat • Rank 21.9 • Science 46%

Spatial and spatio-temporal geostatistical modelling, prediction and simulation

QPSReader • Rank 10.9 • Science 57%

A reader for MPS and QPS files

https://github.com/alan-turing-institute/pymc3 • Rank 8.9 • Science 59%

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

dynamicsdm • Rank 8.8 • Science 59%

An R package for species geographical distribution and abundance modelling at high spatiotemporal resolution

osmogrid • Rank 5.8 • Science 62%

OSMoGrid is a tool to generate life like electrical grid models based on publicly available data, mainly OpenStreetMap. The tool puts a special focus on low voltage grids.

nimpa • Rank 8.8 • Science 59%

NiftyPET: Neuro-Image Manipulation, Processing and Analysis

https://github.com/amypad/spm12 • Rank 8.8 • Science 59%

Python wrapper around MATLAB and SPM12

gcam-core • Rank 10.8 • Science 57%

GCAM -- The Global Change Analysis Model

lightning-uq-box • Rank 13.8 • Science 54%

Lightning-UQ-Box: Uncertainty Quantification for Neural Networks with PyTorch and Lightning

https://github.com/broadinstitute/str-analysis • Rank 10.8 • Science 57%

Scripts and utilities related to analyzing short tandem repeats (STRs).

@stdlib/random-base-improved-ziggurat • Rank 10.8 • Science 57%

Normally distributed pseudorandom numbers using the improved Ziggurat method.

phenesse • Rank 8.8 • Science 59%

matgl • Rank 18.8 • Science 49%

Graph deep learning library for materials

constrain • Rank 5.8 • Science 62%

Control Strainer (ConStrain) is a data-driven knowledge-integrated framework that automatically verifies that building system controls function as intended.

gridding-cookbook • Rank 3.8 • Science 64%

Small cookbook to review xarray gridding

pbxplore • Rank 8.8 • Science 59%

A suite of tools to explore protein structures with Protein Blocks :snake:

Potnia — Peer-reviewed • Rank 8.8 • Science 59%

Potnia: A Python library for the conversion of transliterated ancient texts to Unicode - Published in JOSS (2025)

grounded-segment-anything • Rank 13.8 • Science 54%

Grounded SAM: Marrying Grounding DINO with Segment Anything & Stable Diffusion & Recognize Anything - Automatically Detect , Segment and Generate Anything