PolytopeWalk — Peer-reviewed • Science 93%

PolytopeWalk: Sparse MCMC Sampling over Polytopes - Published in JOSS (2025)

The Population Synthesis Toolkit (PST) Python Library — Peer-reviewed • Science 98%

The Population Synthesis Toolkit (PST) Python Library - Published in JOSS (2025)

PyStarshade — Peer-reviewed • Science 93%

PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades - Published in JOSS (2025)

PAAT — Peer-reviewed • Science 93%

PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python - Published in JOSS (2025)

aeroscapes • Science 44%

The AeroScapes Semantic Segmentation Dataset

EvoVis — Peer-reviewed • Science 67%

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms - Published in JOSS (2025)

ExcelToShiny — Peer-reviewed • Science 93%

ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates - Published in JOSS (2025)

VectoRose — Peer-reviewed • Science 98%

VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python - Published in JOSS (2025)

bisonpicsuite — Peer-reviewed • Science 93%

bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. - Published in JOSS (2025)

gaia — Peer-reviewed • Science 100%

gaia: An R package to estimate crop yield responses to temperature and precipitation - Published in JOSS (2025)

https://github.com/lymdlut/deeplearning • Science 10%

深度学习入门教程, 优秀文章, Deep Learning Tutorial

vehicle-wheel-detection • Science 44%

polypgen • Science 44%

PolypGen

Lighter — Peer-reviewed • Science 93%

Lighter: Configuration-Driven Deep Learning - Published in JOSS (2025)

3DQLayers — Peer-reviewed • Science 98%

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)

TurboFlow — Peer-reviewed • Science 93%

TurboFlow: Meanline Modelling of Axial Turbines - Published in JOSS (2025)

power-plants-damage-detection • Science 44%

Replication Data for Remote Damage Detection of Power Plants using Deep Learning based drone image analysis

PointClouds.jl — Peer-reviewed • Science 96%

PointClouds.jl: Fast & flexible processing of lidar data - Published in JOSS (2025)

dpest — Peer-reviewed • Science 98%

dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration - Published in JOSS (2025)

bsdata • Science 44%

MEDUSA — Peer-reviewed • Science 93%

MEDUSA: An R tool to model equity and distributional impacts - Published in JOSS (2025)

geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R • Science 92%

geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R - Published in JOSS (2026)

AutoUncertainties — Peer-reviewed • Science 93%

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

Solar Data Tools — Peer-reviewed • Science 96%

Solar Data Tools: a Python library for automated analysis of unlabeled PV data - Published in JOSS (2025)

medRCT — Peer-reviewed • Science 93%

medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R - Published in JOSS (2025)

Syclops — Peer-reviewed • Science 96%

Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data - Published in JOSS (2025)

RiverFlowDynamics v1.0 — Peer-reviewed • Science 92%

RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics - Published in JOSS (2025)

rocole • Science 44%

RoCoLe: A robusta coffee leaf images dataset

Mozzie — Peer-reviewed • Science 98%

Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes - Published in JOSS (2025)

REMORA — Peer-reviewed • Science 93%

REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX) - Published in JOSS (2025)

ICAT — Peer-reviewed • Science 96%

ICAT: The Interactive Corpus Analysis Tool - Published in JOSS (2025)

Giga Connectome — Peer-reviewed • Science 98%

Giga Connectome: a BIDS-app for time series and functional connectome extraction - Published in JOSS (2025)

AI-ANNE — Peer-reviewed • Science 93%

AI-ANNE: (A) (N)eural (N)et for (E)xploration - Published in JOSS (2025)

<code>diverse-seq</code> — Peer-reviewed • Science 93%

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences - Published in JOSS (2025)

elfe3D v1.0.1 — Peer-reviewed • Science 93%

elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D - Published in JOSS (2025)

AquaCrop.jl — Peer-reviewed • Science 93%

AquaCrop.jl: A Process-Based Model of Crop Growth - Published in JOSS (2025)

SAnTex — Peer-reviewed • Science 93%

SAnTex: A Python-based Library for Seismic Anisotropy Calculation - Published in JOSS (2025)

llm-obsidian-content • Science 44%

"Generative wiki" rabbit hole conversations projected into a knowledge garden

mpl • Science 44%

Mathematics Programming Language

MDPSolver — Peer-reviewed • Science 93%

MDPSolver: An Efficient Solver for Markov Decision Processes - Published in JOSS (2025)

car-license-plate • Science 44%

Car License Plate Detection

EKF_CAL — Peer-reviewed • Science 98%

EKF_CAL: Extended Kalman Filter-based Calibration and Localization - Published in JOSS (2025)

corrp — Peer-reviewed • Science 93%

corrp: An R package for multiple correlation-like analysis and clustering in mixed data - Published in JOSS (2025)

popclass — Peer-reviewed • Science 100%

popclass: A Python Package for Classifying Microlensing Events - Published in JOSS (2025)

remotePARTS — Peer-reviewed • Science 93%

remotePARTS: Spatiotemporal autoregression analyses for large data sets - Published in JOSS (2025)

Enhancing short-read sequencing simulation: Updates to NEAT • Science 87%

Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)

target-methylseq-qc — Peer-reviewed • Science 98%

target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files. - Published in JOSS (2025)

CUDA-METRO — Peer-reviewed • Science 93%

CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation - Published in JOSS (2025)

ez-zarr — Peer-reviewed • Science 98%

ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets - Published in JOSS (2025)

pooledpeaks — Peer-reviewed • Science 93%

pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples - Published in JOSS (2025)

ParquetDB — Peer-reviewed • Science 93%

ParquetDB: A Lightweight Python Parquet-Based Database - Published in JOSS (2025)

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

floodnet • Science 44%

FloodNet Challenge

PathSim - A System Simulation Framework — Peer-reviewed • Science 98%

PathSim - A System Simulation Framework - Published in JOSS (2025)

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

road-damage • Science 44%

Road Damage Dataset

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

pbe-si-ads-2024-2-tiaw-t1-sistema-de-rh • Science 44%

icei-puc-minas-pbe-ads-si-2024-2-pbe-si-ads-2024-2-tiaw-ti1-template created by GitHub Classroom

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

sixarm_ruby_attask • Science 44%

SixArm.com » Ruby » AtTask project management bindings

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

peerlab • Science 44%

PeerLab Website

grafit • Science 54%

Toolbox for Frequency Response Function Identification in Gravitational Wave detectors

rotate-osisaf-sea-ice-drift-vectors • Science 54%

This repo demonstrates common transformations of sea-ice drift vector components. It was originally prepared as a companion to the manuscript documenting the first version of the OSI SAF sea-ice drift Climate Data Record (OSI-455) (https://doi.org/10.5194/essd-2023-40).

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

2025-08-04-uwmadison-dc • Science 52%

cvddqchecker • Science 44%

CvdDqChecker: A Software Solution for Explainable and Traceable Assessments of Cardiovascular Disease Data Quality

proportional-delayed-integral-controller-for-non-minimum-phase-systems • Science 67%

2023-02-07-ttt-online-cet • Science 44%

Online Instructor Training on 7 - 8 February from 9 am to 5 pm CET

kuka_robot_driver_interfaces • Science 54%

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

archives-of-attention---letourneau • Science 44%

Collection of primary source documents regarding emergent technologies, advertisements, and various other objects of attention

webui • Science 54%

flybytes • Science 44%

Flybytes is an intermediate language between JVM bytecode and software languages (DSLs, PLs), for compilation and decompilation.

uast4j • Science 54%

UAST - Kotlin

gtalign_alpha • Science 67%

GTalign, high-performance protein structure alignment, superposition and search

BoxesWorld • Science 44%

A box-picking POMDP created using POMDPs.jl

synergistic-pi-controller-design • Science 67%

This repository shares the code base for optimizing PI controllers for delay systems, using the synergy of analytical methods to obtain stability regions and metaheuristic methods to optimize cost functions.

quic-pacing-paper • Science 57%

food-app • Science 67%

@stdlib/random-array-cauchy • Science 44%

Create an array containing pseudorandom numbers drawn from a Cauchy distribution.

sparsenet-panda • Science 44%

A course project for THU machine learning 2025

python-blockchain • Science 44%

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

swing-error • Science 44%

Django Swing | Error

tutorial-geometry-development-using-dd4hep • Science 44%

EIC Tutorial: Geometry development using DD4hep

testingz360 • Science 54%

couperin_clavecin • Science 75%

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

holland-consciousness-scaling-engine-hcse • Science 44%

monteverdi_madrigals • Science 57%

https://dcmlab.github.io/monteverdi_madrigals/

rachmaninoff_piano • Science 75%

safe-control-gym-copy • Science 44%