GitHub
dynamicpredictions
Code accompanying pre-print titled "Predictive neural representations of naturalistic dynamic input", by Ingmar E.J. de Vries and Moritz F. Wurm.
southwardnivalis
Repository of scripts and supplimentary files for the paper Harnessing Historical Sampling to Substantiate Range Shifts: Southward Movement of North American Least Weasels (Mustela nivalis)
hdrm
R package providing a one sample test for high dimensional repeated measures for one or multiple groups
cavity-quantum-criticality
This repository contains the code and data to produce the data figures of arXiv:2302.08528.
lm-evaluation-harness-goose
A framework for few-shot evaluation of language models.
collection_builder_tesst
Testing the Github version of Collection Builder by https://collectionbuilder.github.io/about.html#people
global-chem
A Knowledge Graph of Common Chemical Names to their Molecular Definition
arosics
AROSICS - Automated and Robust Open-Source Image Co-Registration Software
mip-dmp
Python tool with Graphical User Interface to map datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP).
rica
Rica (Reports for ICA) provides an app to visualize ICA components and perform manual classification in an interactive way
appian
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
aiproteomics
A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models.
doi-exercise
Repository to train making a GitHub repository public following these instruction: https://coderefinery.github.io/github-without-command-line/doi/ which are part of this repository by coderefinery: https://github.com/coderefinery/github-without-command-line
tiledmultigpuvisualization
Using tiled display systems for the interactive visualization of GPGPU computed data
ed-lgt
Code for Exact Diagonalization of Quantum Many-Body Hamiltonians and Lattice (Abelian and Non-Abelian) Gauge Theories in D=1,2,3 spatial dimensions
integrate-indicator-software
Scripts to explore the streamlining and integration of software (with focus on R packages) related to the calculation of indicators based on biodiversity data cubes
ar7-wg1-fod-ch99-fig99-python
example, base on ar6 chapter3 figure11, https://github.com/IPCC-WG1/Chapter-3_Fig11
volume-cartographer
Volumetric processing toolkit and C++ libraries for the recovery and restoration of damaged cultural materials
https://github.com/inutano/rsem
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
fluidimage
:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
lc-containers_vms
Library Carpentry Containers and Virtual Machines for Librarians
notch-delta-coupling
Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page
faser-2-mphys-project-acts
My edits to the ACTS simulation software for simulating background radiation in the FASER-2 detector.
https://github.com/ivis-at-bilkent/cytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
mech-m-dual-1-dbm
Course material for a ~3 * 15 hours (5 ECTS) course on basic concepts for data science. All the topics are presented with the Python implementation included. We cover matrix decompositions, regression, signal processing, sparsity and compressed sensing and a bit of statistics.
https://github.com/inutano/pitagora-cwl
Common Workflow Language tools and workflows by Pitagora-Network
m4fsdp
Output routines for extracting results from the MAgPIE framework (versions 4.x) for the FSDP project
software_lifecycle_planning
FAIR2 for research software Training program at the U. of Sheffield
methane_dispersion_modelling
Functions and scripts to do dispersion modelling of dissolved methane released to the water column at methane seeps.
ux-design-strudel
A lesson teaching rapid usability testing, intended for use as a 2-3 hour hands-on tutorial
mbon_data_workshop_2025
This workshop aims to provide MBON teams with practical tools and expert guidance for mobilizing their biological data into OBIS.
aopwikirdf
This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that is loaded with the AOP-Wiki RDF
psf-toolbox
A custom MATLAB toolbox for fMRI data acquisition and estimation of population spatial frequency tuning.
sfrc
sFRC: To detect hallucinated regions in medical images reconstructed using AI
stat-phys-notes
Lecture Notes for the MSc course "Statistical Methods for the Physical Sciences"
charting-first-encounters
Project website for Christian Egan at Boston College
medal
Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medical domain
awesome-llms-meet-multimodal-generation
🔥🔥🔥 A curated list of papers on LLMs-based multimodal generation (image, video, 3D and audio).
ahmad_jamal_mini_exhibit
This mini exhibit showcases some items from this collection for LIS2222.
