GitHub
replitimer
Step-by-step instructions and Snakemake pipeline for processing Replication Timing Data
https://github.com/ivandiliso/triqlet
A PyTorch and Qiskit abstraction layer for metric learning and quantum neural networks using TripletLoss
https://github.com/fgazzelloni/mlr3
mlr3: Machine Learning in R - next generation
pinna-anthropometry-extraction
Extraction of anthropometric features from pinna depth images
dam-anomaly-detection
[AVSS21 Oral] A framework consisting of Dissimilarity Attention Module (DAM) to discriminate the anomaly instances from normal ones both at feature level and score level. In order to decide instances to be normal or anomaly, DAM takes local spatio-temporal (i.e. clips within a video) dissimilarities into account rather than the global temporal context of a video.
auto_populate_fields
This REDCap Module provides rich control of default values for data entry fields via a set of action tags. These action tags allow fields to be populated based on values from an ordered list of fields and static values. The fields can be read from the current event or the previous event in longitudinal projects.
wrfsnowdrift
modified code from https://github.com/ChristinaSchmid/snowdrift for snow drift simulations in WRF
multiscale-adversarial-attention-gates
Code for the paper: Valvano G. et al. (2021), Learning to Segment from Scribbles using Multi-scale Adversarial Attention Gates
iv-q4-birdclef-2024
Team Epoch IV's solution to the BirdCLEF 2024 competition. Includes the award-winning working note🏆
author-profiling-pan2023
Symbol Team model for PAN@AP 2023 shared task on Profiling Cryptocurrency Influencers with Few-shot Learning
manifesto
Code is Science - a manifesto for anyone who deals with code in a scientific scenario
cacs-yolo
About Code release for "CACS-YOLO: A Lightweight Model for Insulator Defect Detection Based on Improved YOLOv8m" https://doi.org/10.1109/TIM.2024.3453332
exponential-asymptotics
General code to run the computation to study homoclinic snaking in general reaction-diffusion equations.
pylipdtutorials
This repository contains notebooks to learn how to use pylipd.
r-ecology-lesson-previous
A snapshot of _Data Analysis and Visualisation in R for Ecologists_ before a major redesign
Smesh
Smesh.jl is a lightweight wrapper of the Fortran package smesh for generation and handling of unstructured meshes
stif
"Space-Time Interpolation and Forecasting" - Predicting spatio-temporally distributed variables via space-time regression kriging using numpy and numba.
unifhycontrib-artemis
A unifhy-compliant version of the distributed hydrological model Artemis
https://github.com/fgittins/mullerpy
A Python implementation of Muller's method.
unifhycontrib-smart
A unifhy-compliant version of the rainfall-runoff model SMART
insectDisease
An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)
xenon
A middleware abstraction library that provides a simple programming interface to various compute and storage resources.
nucleosid
Nucleos'ID is a Python-based software to identify post-transcriptional modifications of RNA at the nucleoside level.
doc_guidelines
A set of guidelines for documenting bioinformatics tools and workflows
https://github.com/fgittins/tricubic
A Python implementation of a tricubic interpolator in three dimensions.
studious-happiness
Previewing the Workbench version of Workflows with Python and Git
SNaQ
Julia package for the inference of semi-directed phylogenetic networks under pseudolikelihood model
https://github.com/fgittins/nonlinearsolve.jl
High-performance and differentiation-enabled nonlinear solvers (Newton methods), bracketed rootfinding (bisection, Falsi), with sparsity and Newton-Krylov support.
https://github.com/fgittins/scimlbenchmarks.jl
Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
web-visualization
The aim of this project is to develop a web interface for visualizing indexed documents, enriched by exploiting the semantic index
skyloc
Tools related to Sidereal (e.g., stars) or Solar System Objects (SSO) locator (e.g., apparent position and movements) for general purposes. Heavily influenced by the `kete` and SPICE tools.
https://github.com/fgittins/adventofcode2024.jl
My attempts at the Advent of Code 2024 in the Julia programming language.
nimplex
NIM simPLEX: A concise scientific Nim library (with CLI and Python binding) providing samplings, uniform grids, and traversal graphs in compositional (simplex) spaces.
drug-repurposing-datasets
Drug Repurposing Datasets for Collaborative Filtering Methods. Notebooks and code to generate datasets for collaborative filtering-based drug repurposing.
globus-serverless-portal
An example of a gateway built and distributed using Globus's serverless data portal template.