GitHub
genomebioinformaticscourse
Course description of the Genome Bioinformatics Course at Utrecht University
sd-fair-mod
Supplemental material for paper "Fair-mod: Fair Modular Community Detection"
https://github.com/a-herzog/calc
Calculator is a web service for different calculation tasks.
iterativeheaps.jl
Julia package for iterative heaps w/cache arrays, including for distribute
ucv-mediacion-moderacion
Talleres de mediación y moderación en la UCV 19 y 27/02/2021
ventriclescnn
Deep-learning MRI segmentation of ventricles in pediatric hydrocephalus using nnU-Net and VParNet.
FlagSOS
A julia package for extremal combinatorics based on the flag algebra method.
2022-05-25-wssu-online
Data Analysis and Visualization Workshop with Python, May 25-27, 2022 at Winston-Salem State University, NC (virtual)
ar_md
MD trajectory prediction and state classification with autoregressive architectures
https://github.com/ivis-at-bilkent/cosep-base
Core module for compound spring embedder based layout styles with port support
metadataframework
Accompanying repository to the paper "A metadata-based framework for combining data sources in official statistics"
terrestrialsnowarea_atbd_v2
Jupyter Book for the CIMR Level-2 Terrestrial Snow Area ATBD developed in the DEVALGO study
mosaic
A framework for training WSI-level CoCa models for computational pathology
lc-github-to-local
This lesson introduces version control by starting with GitHub and moving to local repositories using GitHub Desktop, without using the command line.
marifl_crawling
Smart Website Crawler mit intelligenter Navigationsanalyse - entwickelt mit GitHub Copilot
arabwomen-exhibit
This Exhibit documents the contributions of pioneering Arab women writers and journalists who played a important role in shaping modern Arabic literature and press during the late 19th and early 20th centuries.
https://github.com/ivorytower152/replknet-pytorch
Scaling Up Your Kernels to 31x31: Revisiting Large Kernel Design in CNNs (CVPR 2022)
graphameleon-ds
An RDF dataset of Web navigation traces, generated by the Graphameleon Web extension
prevent_past_or_future_dates
This REDCap module adds actions tags @PREVENT-FUTUREDATE and @PREVENT-PASTDATE that can be applied to date fields - i.e., a text field with date validation applied.
lightsnip
Hard fork of curso-r/treesnip specifically for CCAO LightGBM regressions
@stdlib/random-array-bernoulli
Create an array containing pseudorandom numbers drawn from a Bernoulli distribution.
tutorial-simulations-using-npsim-and-geant4
EIC Tutorial: Simulations using ddsim and Geant4
greatbarrierreefassignment
Here is the repository I used for my DATA3888 Discipline Assignment One
mr.divw
Debiased Inverse-Variance Weighted Estimator in Two-Sample Summary-Data Mendelian Randomization
pygismo
G+Smo (pronounced gismo or gizmo) is a C++ library for isogeometric analysis (IGA). Geometry plus simulation modules aims at the seamless integration of Computer-aided Design (CAD) and Finite Element Analysis (FEA).
https://github.com/ivorytower152/ultralytics
NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite
nf-fastq2bam
Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data
sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
cTMed
Calculates standard errors and confidence intervals for effects in continuous-time mediation models.
pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms
pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms - Published in JOSS (2026)
vkcompviz
Vulkan image and data processing framework capable of running a cascade of compute shaders and displaying or storing the result.
hermes-rheo
Python package designed to complement and extend the piblin library, offering a set of transforms tailored for analysis of rheological data
SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery
SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery - Published in JOSS (2026)
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)
https://github.com/spectralmatch/spectralmatch
Relative radiometric normalization toolkit for raster mosaics and time series
FAIRmaterials: Ontology Tools with Data FAIRification in Development
FAIRmaterials: Ontology Tools with Data FAIRification in Development - Published in JOSS (2026)
$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices
$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices - Published in JOSS (2026)
aiida-aimall: A Python package for automating workflows for AIMAll software
aiida-aimall: A Python package for automating workflows for AIMAll software - Published in JOSS (2026)
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)
Dyad: a binary-star dynamics and statistics library for Python
Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)