GitHub
lauenn
LaueNN- neural network training and prediction routine to index single and polycrystalline Laue diffraction patterns
funcscan
(Meta-)genome screening for functional and natural product gene sequences
https://github.com/arogozhnikov/hep_ml
Machine Learning for High Energy Physics.
mosec
A high-performance ML model serving framework, offers dynamic batching and CPU/GPU pipelines to fully exploit your compute machine
waporcodes
Jupyter notebooks on WaPOR based monitoring of water productivity and irrigation performance indicator
pytorch_optimizer
optimizer & lr scheduler & loss function collections in PyTorch
dssdata
⚡A python micro-framework for simulation and data analysis of electrical distribution systems modeled on OpenDSS.
biobb-vs
Biobb_vs is the Biobb module collection to perform virtual screening studies.
openff-bespokefit
Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.
frc
frc is a Python package for computing the Fourier Ring Correlation (FRC) of images using DIPlib
https://github.com/materialsvirtuallab/m3gnet
Materials graph network with 3-body interactions featuring a DFT surrogate crystal relaxer and a state-of-the-art property predictor.
RestrictedBoltzmannMachines
Train and sample Restricted Boltzmann machines in Julia
pyvolutionary
This repository contains pyVolutionary, a package collecting metaheuristic algorithms
MomentClosure
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
NormalyzerDE
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
autokoopman
AutoKoopman - automated Koopman operator methods for data-driven dynamical systems analysis and control.
harmony
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
meltpt
Calculate pressures and temperatures of melting for basaltic rocks and fit with melting models.
Pymagicc
Pymagicc: A Python wrapper for the simple climate model MAGICC - Published in JOSS (2018)
genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
pybasic-illumination-correction
Python implementation of the BaSiC shading correction method
ml-hierarchical-confusion-matrix
Neo: Hierarchical Confusion Matrix Visualization (CHI 2022)
random-survival-forest
A Random Survival Forest implementation for python inspired by Ishwaran et al. - Easily understandable, adaptable and extendable.
fr.inria.gforge.spirals
Open-science code of the program repair tool described in "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming" (SANER'17)
https://github.com/tilde-lab/quantum_esperanto
Very fast parser for the XML logs produced with the VASP, Vienna Ab initio Simulation Package
https://github.com/charlesll/rampy
Python software for spectral data processing (IR, Raman, XAS...)
kshell-utilities
Handy utilities for processing nuclear shell model data from KSHELL
project-pareto
An Optimization Framework for Produced Water Management and Beneficial Reuse
epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
timetracker-csv
Pandas-friendly time tracking from the command line, repo by repo
unet
"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.
beditor
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
ppdyn
Plasma Particle Dynamics (PPDyn), a python code to simulate plasma particles using Molecular Dynamics Algorithm. Numba JIT compiler for Python has been implemented for faster performance. Detailed documentation can be found at https://ppdyn.readthedocs.io/.
ClosedLoopReachability
Reachability analysis for closed-loop control systems in Julia
honestcybereval
An honest eval of the cyber risk of AI using a real cyber task (vs proxy tasks).
pyproj
Python interface to PROJ (cartographic projections and coordinate transformations library)
prob-epi
Course materials of "Bayesian Modelling and Probabilistic Programming with Numpyro, and Deep Generative Surrogates for Epidemiology"
CWatM
Community Water Model (CWatM) is a hydrological model simulating the water cycle daily at global and local levels, historically and into the future, maintained by IIASA’s Water Security group
annif
Annif is a multi-algorithm automated subject indexing tool for libraries, archives and museums.
warpv-configurator-chakra
WARP-V is an open-source RISC-V CPU core generator written in TL-Verilog.
torchdistill
A coding-free framework built on PyTorch for reproducible deep learning studies. PyTorch Ecosystem. 🏆26 knowledge distillation methods presented at CVPR, ICLR, ECCV, NeurIPS, ICCV, etc are implemented so far. 🎁 Trained models, training logs and configurations are available for ensuring the reproducibiliy and benchmark.
qslib
QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing and molecular programming systems.
galaxies-datasets
Galaxies Datasets is a collection of ready-to-use extragalactic astronomy datasets for use with TensorFlow and other Machine Learning frameworks.
archspec
A library for detecting, labeling, and reasoning about microarchitectures
https://github.com/alan-turing-institute/open-research-community-management
Establishing cross-community collaborations and promoting open research in data science
goneat
The GOLang implementation of NeuroEvolution of Augmented Topologies (NEAT) method to evolve and train Artificial Neural Networks without error back propagation
