GitHub
PSD: Parallel Finite Element Solver for Continuum Dynamics
PSD: Parallel Finite Element Solver for Continuum Dynamics - Published in JOSS (2026)
pyhctsa: A Python package for highly comparative time-series analysis
pyhctsa: A Python package for highly comparative time-series analysis - Published in JOSS (2026)
https://github.com/ferrite-fem/ferriteinterfaceelements.jl
Interface elements (aka cohesive elements) for Ferrite.jl
https://github.com/fertiglab/spatial_venous_invasion_pdac
Spatial profiling of venous invasion in human pancreatic ductal adenocarcinoma
https://github.com/fertiglab/cogaps
Bayesian MCMC matrix factorization algorithm
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
torch-kde
A differentiable implementation of kernel density estimation in PyTorch.
rdm_program_su
The program used to provide Random Dot Motion stimuli in a experiment.
jade
Core implementation of the JADE (Joining Atmosphere and Dynamics for Exoplanets) model.
hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
indicpy4health
Lightweight, Fast, and Intuitive Indicator Calculations Python Library from Health data.
coxeter-groups
Mathematica software to help study Coxeter groups by computing examples and visualisations
misp
MISP (core software) - Open Source Threat Intelligence and Sharing Platform
ac-exercises
Exercise solutions in Lean 4 for the book "Automatic complexity: a computable measure of irregularity", De Gruyter, 2024.
riscv_research_project
Research Project for ISAE Supaero Msc. Aerospace Engineering
ndarray-base-unary-reduce-subarray
Perform a reduction over a list of specified dimensions in an input ndarray and assign results to a provided output ndarray.
evdmeshlib
The code that accompanies the research article in Neurosurgical Focus https://doi.org/10.3171/2025.4.FOCUS25163
nsd2_req_subunit
Code for Paper : NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis
ivb-replication
Replication code for the IVB model with Hierarchical Perceptive Memory and Adaptive Conditional Path
argmining20-social-bias-argumentation
Code for the paper "Argument from Old Man’s View: Assessing Social Bias in Argumentation".
automated-california-av-dataset
AV Collision report dataset from California DMV
classiq-library
The Classiq Library is the largest collection of quantum algorithms and applications. It is the best way to explore quantum computing software. We welcome community contributions to our Library 🙌
bachelor_thesis_project
System for Training-based Expansion of Tools for Proper Name Mentions Recognition Based on Active Learning
forex-trading-automation-with-deep-reinforcement-learning
Forex Trading Automation with PPO, ACKTR, DDPG, TD3 and Ensemble Strategy