GitHub
genome_tracks
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
sars-cov-2-sequenzdaten_aus_deutschland
Ein zentraler Bestandteil einer erfolgreichen Erregersurveillance ist das Verständnis der Verbreitung eines Erregers sowie seiner pathogenen Eigenschaften. Hierbei stellt das Wissen über das Erregergenom eine wichtige Informationsquelle dar. So erlaubt der Nachweis von Mutationen im Genom eines Erregers, Verwandtschaftsbeziehungen zu rekonstruie...
abwassersurveillance_amelag_-_wochenbericht
Im Rahmen des Vorhabens „Abwassermonitoring für die epidemiologische Lagebewertung“ (AMELAG) wird in Deutschland das Abwasser von ausgewählten Kläranlagen auf verschiedene Krankheitserreger untersucht. Der folgende Bericht präsentiert die vergangenen und aktuellen Ergebnisse und Entwicklungen dieser Untersuchungen.
thebest
© Official GitHub Repository | FelooPy | Integrated optimization environment
in-context-asr
a tiny evaluation dataset for ASR models measuring their ability to adapt based on context
sofaviscoelastic
A Plugin for the SOFA framework to describe linear viscoelastic and visco-hyperelastic materials
llm-change-agent
LLM Change Agent is a command-line interface (CLI) tool designed to interact with various language models for generating and modifying ontology definitions. It offers a range of functionalities to streamline KGCL command generation tasks.
kan_voice_pathology_detection
This repository contains the code for the paper "Kolmogorov Arnold Network-Based Voice Pathology Detection" by Jan Vrba, Jakub Steinbach, Tomáš Jirsa, Jakub Seiner, Yuwen Zeng, Kei Ichiji, Noriyasu Homma
spark_bts_kifaru
MICCA_BRATS_Africa_2023 Kifaru Team: Generative Style Transfer for MR Image Segmentation: A Case of Glioma Segmentation in Sub-Saharan Africa
promise
An application development framework that supports the development of complex language-based interactions using state machine modeling concepts
jordan22_dataset
Jordan22 Dataset that used in Identification of Plant Diseases in Jordan Using Convolutional Neural Networks
marine-detect
Object detection models for identifying species in marine environments.
coq-multivariate-rde-solver
A Coq formalization and solver for general multivariate recursive domain equations, enabling the construction and verification of solutions for recursive structures in programming language semantics and formal methods.
clinicaltemplatereader
A public API to interpret Eclipse plan templates, objective templates, and clinical protocols and utilize the interpretation in the generation of automated plans.
lc-authoring-open-science
Introduces open science practices in writing, publishing, and peer review. Covers open tools, contributor roles, and how transparency supports reproducibility and equity.
https://github.com/llrs/ghana_packages
Workshop about how to build R packages for the Ghana R user group
jlhfw
Custom FireWorks extensions used by IMTEK Simulation, University of Freiburg
stickydesign
A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.
simultaneous-fmri-and-eyetracking
Project repository for our first study on observing program comprehension with simultaneous fMRI and eye tracking
software-landscape-analysis
Enabling software landscape analyses to better understand existing efforts or solutions.
free_energy
These are the tools that I developed for different free energy calculations
pywoodway
Python library to interface with Woodway treadmills, specifically designed for the Woodway split belt treadmill.
evocatio
enoppy
ENOPPY: A Python Library for Engineering Optimization Problems
2024-cryohts-facility
Data repository for Alexis' RSI paper on the cryogenic HTS irradiation facility
v-d4rl
Challenges and Opportunities in Offline Reinforcement Learning from Visual Observations
kse-loc-data-hub
Building a Comprehensive Repository of Hromada-Level Data in Ukraine to Facilitate Research and Informed Policy Decisions. This repository supports the collection and accessibility of critical data at the hromada level in Ukraine for research and policy development.
fast-multi-join-sketch
Fast Cardinality Estimation of Multi-Join Queries Using Sketches
@stdlib/random-array-normal
Create an array containing pseudorandom numbers drawn from a normal distribution.
feer_tn_example
Dataset about tree species composition in Tennessee's FIA plots (surveyed in 2017) and the species' tolerance to drought and shade.
g4discovery
Pipeline for annotating/predicting G-Quadruplexes (G4s) in a genome sequence, combining pqsfinder and G4Hunter.
phase-field-modeling-ferroelectrics
Phase field simulations of ferroelectrics using FFT.
vdc-space-time-feats
Software documentation for: Vector data cubes for features evolving in space and time
message-passing-for-da
A JAX message passing algorithm aimed at data assimilation
callusgs
callusgs Aims To Be A Complete Implementation Of USGS's machine-to-machine API (v1.5.0)