GitHub
arosics
AROSICS - Automated and Robust Open-Source Image Co-Registration Software
mip-dmp
Python tool with Graphical User Interface to map datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP).
rica
Rica (Reports for ICA) provides an app to visualize ICA components and perform manual classification in an interactive way
appian
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
aiproteomics
A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models.
doi-exercise
Repository to train making a GitHub repository public following these instruction: https://coderefinery.github.io/github-without-command-line/doi/ which are part of this repository by coderefinery: https://github.com/coderefinery/github-without-command-line
tiledmultigpuvisualization
Using tiled display systems for the interactive visualization of GPGPU computed data
ed-lgt
Code for Exact Diagonalization of Quantum Many-Body Hamiltonians and Lattice (Abelian and Non-Abelian) Gauge Theories in D=1,2,3 spatial dimensions
integrate-indicator-software
Scripts to explore the streamlining and integration of software (with focus on R packages) related to the calculation of indicators based on biodiversity data cubes
ar7-wg1-fod-ch99-fig99-python
example, base on ar6 chapter3 figure11, https://github.com/IPCC-WG1/Chapter-3_Fig11
volume-cartographer
Volumetric processing toolkit and C++ libraries for the recovery and restoration of damaged cultural materials
https://github.com/inutano/rsem
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
fluidimage
:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
lc-containers_vms
Library Carpentry Containers and Virtual Machines for Librarians
notch-delta-coupling
Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page
faser-2-mphys-project-acts
My edits to the ACTS simulation software for simulating background radiation in the FASER-2 detector.
https://github.com/ivis-at-bilkent/cytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
mech-m-dual-1-dbm
Course material for a ~3 * 15 hours (5 ECTS) course on basic concepts for data science. All the topics are presented with the Python implementation included. We cover matrix decompositions, regression, signal processing, sparsity and compressed sensing and a bit of statistics.
https://github.com/inutano/pitagora-cwl
Common Workflow Language tools and workflows by Pitagora-Network
m4fsdp
Output routines for extracting results from the MAgPIE framework (versions 4.x) for the FSDP project
privacy_collaborative_research_cycle
This repository houses the NIST, submissions and evaluation data related to the Collaborative Research Cycle
ndarray-vector-int16
Create a signed 16-bit integer vector (i.e., a one-dimensional ndarray).
lasermix
[CVPR 2023 Highlight] LaserMix for Semi-Supervised LiDAR Semantic Segmentation
stats-strided-dmeanpn
Calculate the arithmetic mean of a double-precision floating-point strided array using a two-pass error correction algorithm.
kinetics-optimization
Jupyter Hub Code for the multi strategy optimization of Reaction Kinetics for Methanol Synthesis
stats-strided-dstdevch
Calculate the standard deviation of a double-precision floating-point strided array using a one-pass trial mean algorithm.
khan_fbg-cgm-measues-agreement
Khan et al-Agreement Between Fingerstick Blood Glucose and Continuous Glucose Monitor Measures Among Long-Term Care Facility Residents.
random-tools-unary-factory
Create a function for generating pseudorandom numbers drawn from a single-parameter probability distribution.
instance-segmenation-with-maskrcnn
Use MaskRCNN to do the Instance segmentation
mukh
A comprehensive face analysis library that provides unified APIs for various face-related tasks
constants-float32-max-safe-nth-tribonacci
Maximum safe nth Tribonacci number when stored in single-precision floating-point format.
dabnet
[TNNLS] Official implementation of 'Real-time Semantic Segmentation via Densely Aggregated Bilateral Network', in Pytorch.
https://github.com/dcan-labs/abcd-surf
A citizen science game for ABCD Study Quality Control of surface delineations.
stats-base-ztest-alternative-str2enum
Return the enumeration constant associated with a Z-test alternative hypothesis string.
stats-strided-mediansorted
Calculate the median value of a sorted strided array.
stats-strided-dmaxabs
Calculate the maximum absolute value of a double-precision floating-point strided array.
stats-base-ndarray-min
Compute the minimum value of a one-dimensional ndarray.
blas-base-dtrmv
Perform one of the matrix-vector operations `x = A*x` or `x = A^T*x`.
stats-array-mskmax
Calculate the maximum value of an array according to a mask.
https://github.com/dcelisgarza/wenoof
WENO interpolation Object Oriented Fortran library
seaicedrift_atbd_v2
Jupyterbook for the CIMR Level-2 Sea Ice Drift ATBD developed in the DEVALGO study
math-base-special-ahavercosf
Compute the inverse half-value versed cosine for a single-precision floating point number.