gitlab.com
DMStag
DMStag: Staggered, Structured Grids for PETSc - Published in JOSS (2022)
dantro
dantro: a Python package for handling, transforming, and visualizing hierarchically structured data - Published in JOSS (2020)
PICOS
PICOS: A Python interface to conic optimization solvers - Published in JOSS (2022)
calorine
calorine: A Python package for constructing and sampling neuroevolution potential models - Published in JOSS (2024)
EMD
EMD: Empirical Mode Decomposition and Hilbert-Huang Spectral Analyses in Python - Published in JOSS (2021)
Taguette
Taguette: open-source qualitative data analysis - Published in JOSS (2021)
MyQueue
MyQueue: Task and workflow scheduling system - Published in JOSS (2020)
Akantu
Akantu: an HPC finite-element library for contact and dynamic fracture simulations - Published in JOSS (2024)
CoSApp
CoSApp: a Python library to create, simulate and design complex systems. - Published in JOSS (2024)
Utopia
Utopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systems - Published in JOSS (2020)
open Delft Advanced Research Terra Simulator (open-DARTS)
open Delft Advanced Research Terra Simulator (open-DARTS) - Published in JOSS (2024)
FHI-vibes
FHI-vibes: Ab Initio Vibrational Simulations - Published in JOSS (2020)
Atomic Simulation Interface (ASI)
Atomic Simulation Interface (ASI): application programming interface for electronic structure codes - Published in JOSS (2023)
SpectralModel
SpectralModel: a high-resolution framework for petitRADTRANS 3 - Published in JOSS (2024)
fieldcompare
fieldcompare: A Python package for regression testing simulation results - Published in JOSS (2023)
datafold
datafold: data-driven models for point clouds and time series on manifolds - Published in JOSS (2020)
besos
besos: Building and Energy Simulation, Optimization and Surrogate Modelling - Published in JOSS (2021)
WulffPack
WulffPack: A Python package for Wulff constructions - Published in JOSS (2020)
Siril
Siril: An Advanced Tool for Astronomical Image Processing - Published in JOSS (2024)
PyArmadillo
PyArmadillo: a streamlined linear algebra library for Python - Published in JOSS (2021)
Simple-Web-Server
Simple-Web-Server: a fast and flexible HTTP/1.1 C++ client and server library - Published in JOSS (2019)
STARRED
STARRED: a two-channel deconvolution method with Starlet regularization - Published in JOSS (2023)
UFig v1: The ultra-fast image generator
UFig v1: The ultra-fast image generator - Published in JOSS (2025)
pysrim
pysrim: Automation, Analysis, and Plotting of SRIM Calculations - Published in JOSS (2018)
text2map
text2map: R Tools for Text Matrices - Published in JOSS (2022)
PourPy - A python package to generate potential-pH diagrams
PourPy - A python package to generate potential-pH diagrams - Published in JOSS (2024)
BATMAN
BATMAN: Statistical analysis for expensive computer codes made easy - Published in JOSS (2018)
dfba
dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python - Published in JOSS (2020)
Mantik
Mantik: A Workflow Platform for the Development of Artificial Intelligence on High-Performance Computing Infrastructures - Published in JOSS (2024)
itrm
itrm: Interactive Terminal Utilities - Published in JOSS (2024)
kep_solver
kep_solver: A Python package for kidney exchange programme exploration - Published in JOSS (2022)
elsa
elsa: an elegant framework for tomographic reconstruction - Published in JOSS (2024)
skijumpdesign
skijumpdesign: A Ski Jump Design Tool for Specified Equivalent Fall Height - Published in JOSS (2018)
scikit-finite-diff, a new tool for PDE solving
scikit-finite-diff, a new tool for PDE solving - Published in JOSS (2019)
MetalWalls
MetalWalls: A classical molecular dynamics software dedicated to the simulation of electrochemical systems - Published in JOSS (2020)
PyThia
PyThia: A Python package for Uncertainty Quantification based on non-intrusive polynomial chaos expansions - Published in JOSS (2023)
tsp ("Teaspoon")
tsp ("Teaspoon"): A library for ground temperature data - Published in JOSS (2022)
Phasik
Phasik: a Python package to identify system states in partially temporal networks - Published in JOSS (2023)
GIMS
GIMS: Graphical Interface for Materials Simulations - Published in JOSS (2021)
AMIRIS
AMIRIS: Agent-based Market model for the Investigation of Renewable and Integrated energy Systems - Published in JOSS (2023)
APAV
APAV: An Open-Source Python Package for Mass Spectrum Analysis in Atom Probe Tomography - Published in JOSS (2023)
REMix
REMix: A GAMS-based framework for optimizing energy system models - Published in JOSS (2024)
pyFBS
pyFBS: A Python package for Frequency Based Substructuring - Published in JOSS (2022)
r3f
r3f: Rotation of 3-dimensional Reference Frames - Published in JOSS (2025)
Multiple Inference
Multiple Inference: A Python package for comparing multiple parameters - Published in JOSS (2022)
aiapy
aiapy: A Python Package for Analyzing Solar EUV Image Data from AIA - Published in JOSS (2020)
sfctools - A toolbox for stock-flow consistent, agent-based models
sfctools - A toolbox for stock-flow consistent, agent-based models - Published in JOSS (2023)
QComms QKD Software Toolkit
QComms QKD Software Toolkit - Published in JOSS (2019)
SAILS
SAILS: Spectral Analysis In Linear Systems - Published in JOSS (2020)
DMT-core
DMT-core: A Python Toolkit for Semiconductor Device Engineers - Published in JOSS (2022)
ThermoCodegen
ThermoCodegen: a python/C++ package for the generation of custom thermodynamic models - Published in JOSS (2023)
binary_c-python
binary_c-python: A Python-based stellar population synthesis tool and interface to binary_c - Published in JOSS (2023)
SISSO++
SISSO++: A C++ Implementation of the Sure-Independence Screening and Sparsifying Operator Approach - Published in JOSS (2022)
DARE Platform
DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud - Published in JOSS (2020)
OnToCode
OnToCode: Template-based code-generation from ontologies - Published in JOSS (2019)
Biotrade
Biotrade: A Python package to access and analyse the international trade of bio-based products - Published in JOSS (2023)
Madym
Madym: A C++ toolkit for quantitative DCE-MRI analysis - Published in JOSS (2021)
H-RISK with NoiseModelling
H-RISK with NoiseModelling: a QGIS plugin to predict environmental noise and estimate health risks - Published in JOSS (2024)
BasicTools
BasicTools: a numerical simulation toolbox - Published in JOSS (2023)
AQCNES
AQCNES: A Quasi-Continuum Non-Equilibrium Solver - Published in JOSS (2024)
A-SLOTH
A-SLOTH: Ancient Stars and Local Observables by Tracing Halos - Published in JOSS (2022)
PyCS3
PyCS3: A Python toolbox for time-delay measurements in lensed quasars - Published in JOSS (2020)
The MarINvaders Toolkit
The MarINvaders Toolkit - Published in JOSS (2021)
venco.py
venco.py: A Python model to represent the charging flexibility and vehicle-to-grid potential of electric vehicles in energy system models - Published in JOSS (2025)
RHEA
RHEA: an open-source Reproducible Hybrid-architecture flow solver Engineered for Academia - Published in JOSS (2023)
Interface to high-performance periodic coupled-cluster theory calculations with atom-centered, localized basis functions
Interface to high-performance periodic coupled-cluster theory calculations with atom-centered, localized basis functions - Published in JOSS (2022)
bonsai_ipcc - a Python package for the calculation of national greenhouse gas inventories
bonsai_ipcc - a Python package for the calculation of national greenhouse gas inventories - Published in JOSS (2024)
Predihood
Predihood: an open-source tool for predicting neighbourhoods' information - Published in JOSS (2021)
cppduals
cppduals: a nestable vectorized templated dual number library for C++11 - Published in JOSS (2019)
InspectorCell
InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images - Published in JOSS (2022)
hawen
hawen: time-harmonic wave modeling and inversion using hybridizable discontinuous Galerkin discretization - Published in JOSS (2021)
Tagging Latency Estimator
Tagging Latency Estimator: A Standalone Software for Estimating Latency of Event-Related Potentials in P300-based Brain-Computer Interfaces - Published in JOSS (2023)
BigX
BigX: A geographical dataset visualisation tool - Published in JOSS (2020)
CN-AeroModels
CN-AeroModels: A C++ implementation of aerodynamic models for wind propulsion systems of cargo ships - Published in JOSS (2024)
PIVC
PIVC: A C/C++ Program for Particle Image Velocimetry Vector Computation - Published in JOSS (2023)
tamaas
Tamaas is a C++ library with a Python interface to efficiently solve contact mechanics problems with periodic rough surfaces, plasticity, adhesion and friction.
idinn
idinn: A Python Package for Inventory-Dynamics Control with Neural Networks - Published in JOSS (2025)
VibIR-Parallel-Compute
VibIR-Parallel-Compute: Enhancing Vibration and Infrared Analysis in High-Performance Computing Environments - Published in JOSS (2025)
SigCorr
SigCorr: A Python package for studies of trials factors - Published in JOSS (2023)
python-ags4
python-ags4: A Python library to read, write, and validate AGS4 geodata files - Published in JOSS (2022)
easyCHEM
easyCHEM: A Python package for calculating chemical equilibrium abundances in exoplanet atmospheres - Published in JOSS (2025)
A Java Library for Itemset Mining with Choco-solver
A Java Library for Itemset Mining with Choco-solver - Published in JOSS (2023)
GAIM
GAIM: A C++ library for Genetic Algorithms and Island Models - Published in JOSS (2019)
Pointcloud
Pointcloud: Implementation of point clouds as graphs in the 3D plant modeling platform GroIMP - Published in JOSS (2025)
CNearest
CNearest: A C++ toolkit to use the nearest-neighbour method of regularised stokeslets algorithm to solve viscous flow problems - Published in JOSS (2025)