Updated 10 months ago
nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.
Updated 10 months ago
spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Updated 10 months ago
enrichmap
EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.