Updated 7 months ago

unitvelo • Rank 9.2 • Science 67%

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

Updated 7 months ago

mtp-db • Rank 2.1 • Science 67%

The Membrane Transport Protein Database

Updated 7 months ago

macrophage-regulation • Rank 1.1 • Science 67%

Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation

Updated 7 months ago

spatialvi • Rank 6.8 • Science 57%

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Updated 7 months ago

molkart • Rank 4.5 • Science 57%

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)

Updated 7 months ago

bd-lithium • Science 54%

A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).

Updated 7 months ago

rich_directrna • Science 57%

Nanopore directRNA (hopefully cDNA too ;)) workflow with many transcript reconstruction alternatives

Updated 7 months ago

isocomp • Science 31%

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

Updated 7 months ago

tfactivity • Science 67%

Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.