TSrepr R package — Peer-reviewed • Science 93%

TSrepr R package: Time Series Representations - Published in JOSS (2018)

Gramm — Peer-reviewed • Science 95%

Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)

eitprocessing • Science 44%

Software for electrical impedance tomography data loading, visualization and processing

SSAPy - Space Situational Awareness for Python — Peer-reviewed • Science 100%

SSAPy - Space Situational Awareness for Python - Published in JOSS (2025)

agweather-qaqc — Peer-reviewed • Science 100%

agweather-qaqc: An Interactive Python Package for Quality Assurance and Quality Control of Daily Agricultural Weather Data and Calculation of Reference Evapotranspiration - Published in JOSS (2024)

Finitewave: a lightweight and accessible framework for cardiac electrophysiology simulations • Science 92%

Finitewave: a lightweight and accessible framework for cardiac electrophysiology simulations - Published in JOSS (2026)

nyaml • Science 67%

https://fairmat-nfdi.github.io/nyaml

PANKH: An unsteady potential flow solver for hovering airfoils • Science 93%

PANKH: An unsteady potential flow solver for hovering airfoils - Published in JOSS (2025)

swsc — Peer-reviewed • Science 93%

swsc: A sitewise UCE partitioner - Published in JOSS (2019)

wmpy-power — Peer-reviewed • Science 100%

wmpy-power: A Python package for process-based regional hydropower simulation - Published in JOSS (2024)

Cosmologix: Fast, accurate and differentiable distances in the universe with JAX • Science 87%

Cosmologix: Fast, accurate and differentiable distances in the universe with JAX - Published in JOSS (2026)

MEDUSA — Peer-reviewed • Science 93%

MEDUSA: An R tool to model equity and distributional impacts - Published in JOSS (2025)

Mozzie — Peer-reviewed • Science 98%

Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes - Published in JOSS (2025)

elfe3D v1.0.1 — Peer-reviewed • Science 93%

elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D - Published in JOSS (2025)

ParticleTracking — Peer-reviewed • Science 98%

ParticleTracking: A GUI and library for particle tracking on stereo camera images - Published in JOSS (2025)

SpectriPy — Peer-reviewed • Science 98%

SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python - Published in JOSS (2025)

TikhonovFenichelReductions.jl: A systematic approach to geometric singular perturbation theory • Science 87%

TikhonovFenichelReductions.jl: A systematic approach to geometric singular perturbation theory - Published in JOSS (2026)

pangeo-fish • Science 67%

emba — Peer-reviewed • Science 93%

emba: R package for analysis and visualization of biomarkers in boolean model ensembles - Published in JOSS (2020)

stylo • Science 57%

SpinVibe: Simulating spin-phonon coupling for molecular qubits • Science 87%

SpinVibe: Simulating spin-phonon coupling for molecular qubits - Published in JOSS (2026)

explabox • Science 67%

Explore/examine/explain/expose your model with the explabox!

Graphem - JAX: Node Influence Maximization via Geometric Embeddings • Science 98%

Graphem - JAX: Node Influence Maximization via Geometric Embeddings - Published in JOSS (2025)

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi • Science 93%

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi - Published in JOSS (2025)

AutoUncertainties — Peer-reviewed • Science 93%

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

REMORA — Peer-reviewed • Science 93%

REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX) - Published in JOSS (2025)

MousebreedeR — Peer-reviewed • Science 93%

MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms - Published in JOSS (2024)

CLOOPSy - Copernicus Land cOver crOwdsourcing Platform for Sentinel-based mapping — Peer-reviewed • Science 89%

CLOOPSy - Copernicus Land cOver crOwdsourcing Platform for Sentinel-based mapping - Published in JOSS (2017)

OrbDot — Peer-reviewed • Science 93%

OrbDot: A Python package for studying the secular evolution of exoplanet orbits - Published in JOSS (2025)

ICAT — Peer-reviewed • Science 96%

ICAT: The Interactive Corpus Analysis Tool - Published in JOSS (2025)

optimeo • Science 67%

OPTIMEO is a package doubled by a web application that helps you optimize your experimental process by generating a Design of Experiment, generating new experiments using Bayesian Optimization (BO), and analyzing the results of your experiments using Machine Learning models.

AncesTrim - a tool for trimming complex pedigrees — Peer-reviewed • Science 93%

AncesTrim - a tool for trimming complex pedigrees - Published in JOSS (2017)

STON: SofTware for petrOgraphic visualisatioN • Science 87%

STON: SofTware for petrOgraphic visualisatioN - Published in JOSS (2025)

PyGDH — Peer-reviewed • Science 87%

PyGDH: Python Grid Discretization Helper - Published in JOSS (2021)

LoadProfileGenerator — Peer-reviewed • Science 98%

LoadProfileGenerator: An Agent-Based Behavior Simulation for Generating Residential Load Profiles - Published in JOSS (2022)

corrp — Peer-reviewed • Science 93%

corrp: An R package for multiple correlation-like analysis and clustering in mixed data - Published in JOSS (2025)

easyCHEM — Peer-reviewed • Science 87%

easyCHEM: A Python package for calculating chemical equilibrium abundances in exoplanet atmospheres - Published in JOSS (2025)

ginjax — Peer-reviewed • Science 93%

ginjax: E(d)-Equivariant CNN for Tensor Images - Published in JOSS (2025)

Giga Connectome — Peer-reviewed • Science 98%

Giga Connectome: a BIDS-app for time series and functional connectome extraction - Published in JOSS (2025)

rdefra: Interact with the UK AIR Pollution Database from DEFRA • Science 87%

rdefra: Interact with the UK AIR Pollution Database from DEFRA - Published in JOSS (2016)

RHEOS.jl -- A Julia Package for Rheology Data Analysis — Peer-reviewed • Science 95%

RHEOS.jl -- A Julia Package for Rheology Data Analysis - Published in JOSS (2019)

A Java Library for Itemset Mining with Choco-solver — Peer-reviewed • Science 87%

A Java Library for Itemset Mining with Choco-solver - Published in JOSS (2023)

VoteKit — Peer-reviewed • Science 93%

VoteKit: A Python package for computational social choice research - Published in JOSS (2025)

Exonoodle — Peer-reviewed • Science 87%

Exonoodle: Synthetic time-series spectra generator for transiting exoplanets - Published in JOSS (2021)

Solar Data Tools — Peer-reviewed • Science 96%

Solar Data Tools: a Python library for automated analysis of unlabeled PV data - Published in JOSS (2025)

commensurability — Peer-reviewed • Science 93%

commensurability: a Python package for classifying astronomical orbits based on their toroid volume - Published in JOSS (2025)

Anime — Peer-reviewed • Science 93%

Anime: Atmospheric and Instrument Models in the Measurement Equation - Published in JOSS (2024)

idinn — Peer-reviewed • Science 87%

idinn: A Python Package for Inventory-Dynamics Control with Neural Networks - Published in JOSS (2025)

GraphCalc — Peer-reviewed • Science 93%

GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems - Published in JOSS (2025)

scmorph — Peer-reviewed • Science 98%

scmorph: a Python package for analysing single-cell morphological profiles - Published in JOSS (2025)

AI-ANNE — Peer-reviewed • Science 93%

AI-ANNE: (A) (N)eural (N)et for (E)xploration - Published in JOSS (2025)

medRCT — Peer-reviewed • Science 93%

medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R - Published in JOSS (2025)

IAMAP: Unlocking Deep Learning in QGIS for non-coders and limited computing resources • Science 87%

IAMAP: Unlocking Deep Learning in QGIS for non-coders and limited computing resources - Published in JOSS (2026)

QGDipoles.jl — Peer-reviewed • Science 98%

QGDipoles.jl: A Julia package for calculating dipolar vortex solutions to the Quasi-Geostrophic equations - Published in JOSS (2025)

slap2-utils — Peer-reviewed • Science 93%

slap2-utils: Tools for Processing SLAP2 Data - Published in JOSS (2025)

CaNS-Fizzy — Peer-reviewed • Science 93%

CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows - Published in JOSS (2025)

Syclops — Peer-reviewed • Science 96%

Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data - Published in JOSS (2025)

athlytics • Science 49%

🏃 An R package for advanced sports performance analysis and training load monitoring using Strava data.

PyQMRI — Peer-reviewed • Science 87%

PyQMRI: An accelerated Python based Quantitative MRI toolbox - Published in JOSS (2020)

TMLE.jl — Peer-reviewed • Science 98%

TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia - Published in JOSS (2025)

c212 — Peer-reviewed • Science 93%

c212: An R Package for the Detection of Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) - Published in JOSS (2020)

VibIR-Parallel-Compute — Peer-reviewed • Science 87%

VibIR-Parallel-Compute: Enhancing Vibration and Infrared Analysis in High-Performance Computing Environments - Published in JOSS (2025)

NeuralFieldEq.jl — Peer-reviewed • Science 93%

NeuralFieldEq.jl: A flexible solver to compute Neural Field Equations in several scenarios - Published in JOSS (2022)

UnfoldMakie.jl — Peer-reviewed • Science 87%

UnfoldMakie.jl: EEG/ERP visualization package - Published in JOSS (2025)

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

The MOOSE Thermal Hydraulics Module — Peer-reviewed • Science 98%

The MOOSE Thermal Hydraulics Module - Published in JOSS (2024)

YetAnotherSimulationSuite.jl: An Atomic Simulation Suite in Julia • Science 87%

YetAnotherSimulationSuite.jl: An Atomic Simulation Suite in Julia - Published in JOSS (2025)

peridem • Science 49%

High-fidelity modeling of granular media consisting of deformable complex-shaped particles

C4DYNAMICS: The Python framework for state-space modeling and algorithm development • Science 87%

C4DYNAMICS: The Python framework for state-space modeling and algorithm development - Published in JOSS (2025)

Snowdrop — Peer-reviewed • Science 93%

Snowdrop: Python Package for DSGE Modeling - Published in JOSS (2025)

Pysewer — Peer-reviewed • Science 87%

Pysewer: A Python Library for Sewer Network Generation in Data Scarce Regions - Published in JOSS (2024)

FLAM — Peer-reviewed • Science 95%

FLAM: Fast Linear Algebra in MATLAB - Algorithms for Hierarchical Matrices - Published in JOSS (2020)

smolyax — Peer-reviewed • Science 98%

smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX - Published in JOSS (2025)

dispersiveshallowwater.jl • Science 67%

A Julia library of structure-preserving numerical methods for dispersive wave equations

PhenoFeatureFinder — Peer-reviewed • Science 95%

PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features - Published in JOSS (2024)

Parallel-CDM — Peer-reviewed • Science 98%

Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB - Published in JOSS (2025)

eSCAPE — Peer-reviewed • Science 87%

eSCAPE: parallel global-scale landscape evolution model - Published in JOSS (2018)

RiverFlowDynamics v1.0 — Peer-reviewed • Science 92%

RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics - Published in JOSS (2025)

molify: Molecular Structure Interface • Science 87%

molify: Molecular Structure Interface - Published in JOSS (2025)

XCALibre.jl — Peer-reviewed • Science 93%

XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library - Published in JOSS (2025)

etl-forge • Science 54%

ChemInformant — Peer-reviewed • Science 98%

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization • Science 87%

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization - Published in JOSS (2026)

AquaCrop.jl — Peer-reviewed • Science 93%

AquaCrop.jl: A Process-Based Model of Crop Growth - Published in JOSS (2025)

SDA — Peer-reviewed • Science 93%

SDA: a symbolic differential algebra package in C++ - Published in JOSS (2025)

targene-pipeline • Science 44%

Nextflow pipeline for Targeted-Learning of genetic effects

goFlux — Peer-reviewed • Science 95%

goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience - Published in JOSS (2024)

powerfactory-tools • Science 75%

A Python toolbox for the (external) control of DIgSILENT PowerFactory.

CPgeneProfiler — Peer-reviewed • Science 95%

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies - Published in JOSS (2020)

dia — Peer-reviewed • Science 95%

dia: An R package for the National Oceanic and Atmospheric Administration dam impact analysis - Published in JOSS (2025)

NeuNorm — Peer-reviewed • Science 95%

NeuNorm: Neutron Imaging Normalization Library - Published in JOSS (2018)

PSD: Parallel Finite Element Solver for Continuum Dynamics • Science 87%

PSD: Parallel Finite Element Solver for Continuum Dynamics - Published in JOSS (2026)

https://github.com/USACE-RMC/Numerics • Science 26%

Numerics is a free and open-source library for .NET developed by USACE-RMC, providing a comprehensive set of methods and algorithms for numerical computations and statistical analysis.

ProntoPCR: Efficient qPCR Data Analysis Software • Science 87%

ProntoPCR: Efficient qPCR Data Analysis Software - Published in JOSS (2026)

Compare Expression Profiles for Pre-defined Gene Groups with C-REx — Peer-reviewed • Science 95%

Compare Expression Profiles for Pre-defined Gene Groups with C-REx - Published in JOSS (2019)

validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools — Peer-reviewed • Science 98%

validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools - Published in JOSS (2025)

GOBLIN Lite — Peer-reviewed • Science 93%

GOBLIN Lite: A National Land Balance Model for Assessment of Climate Mitigation Pathways for Ireland. - Published in JOSS (2024)

COVID-19 Data Hub — Peer-reviewed • Science 95%

COVID-19 Data Hub - Published in JOSS (2020)

simulist • Science 67%

An R package for simulating line lists

ai4bmr-datasets • Science 26%