Intracranial Electrode Location and Analysis in MNE-Python
Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)
UMAP
UMAP: Uniform Manifold Approximation and Projection - Published in JOSS (2018)
PyVista
PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
Yellowbrick
Yellowbrick: Visualizing the Scikit-Learn Model Selection Process - Published in JOSS (2019)
pyam
pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)
Regl-Scatterplot
Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)
PlatiPy
PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
OpenSpace
OpenSpace: An open-source astrovisualization framework - Published in JOSS (2017)
textnets
textnets: A Python package for text analysis with networks - Published in JOSS (2020)
Jupyter Scatter
Jupyter Scatter: Interactive Exploration of Large-Scale Datasets - Published in JOSS (2024)
PVGeo
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
GemGIS - Spatial Data Processing for Geomodeling
GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
Netgraph
Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
see
see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)
FSharpGephiStreamer
FSharpGephiStreamer: An idiomatic bridge between F# and network visualization - Published in JOSS (2019)
Delve
Delve: Neural Network Feature Variance Analysis - Published in JOSS (2022)
MiscMetabar
MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)
modelStudio
modelStudio: Interactive Studio with Explanations for ML Predictive Models - Published in JOSS (2019)
archetypal
archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
Plonk
Plonk: Smoothed particle hydrodynamics analysis and visualization with Python - Published in JOSS (2019)
ewstools
ewstools: A Python package for early warning signals of bifurcations in time series data - Published in JOSS (2023)
rempsyc
rempsyc: Convenience functions for psychology - Published in JOSS (2023)
MicrobiomeR
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows - Published in JOSS (2019)
RSMTool
RSMTool: collection of tools building and evaluating automated scoring models - Published in JOSS (2016)
Kepler Mapper
Kepler Mapper: A flexible Python implementation of the Mapper algorithm. - Published in JOSS (2019)
TDAstats
TDAstats: R pipeline for computing persistent homology in topological data analysis - Published in JOSS (2018)
VisualTorch
VisualTorch: Streamlining Visualization for PyTorch Neural Network Architectures - Published in JOSS (2024)
HiPart
HiPart: Hierarchical Divisive Clustering Toolbox - Published in JOSS (2023)
Psifr
Psifr: Analysis and visualization of free recall data - Published in JOSS (2020)
The plebeian Graph Library
The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)
EDP
EDP: a program for projecting electron densities from VASP onto planes - Published in JOSS (2023)
mrivis
mrivis: Medical image visualization library for neuroscience in python - Published in JOSS (2018)
TLViz
TLViz: Visualising and analysing tensor decomposition models with Python - Published in JOSS (2022)
cartoee
cartoee: Publication quality maps using Earth Engine - Published in JOSS (2019)
egtplot
egtplot: A Python Package for Three-Strategy Evolutionary Games - Published in JOSS (2018)
Simulation Decomposition in Python
Simulation Decomposition in Python - Published in JOSS (2024)
Visualizing alpha-helical peptides in R with helixvis
Visualizing alpha-helical peptides in R with helixvis - Published in JOSS (2018)
Open Source Optical Coherence Tomography Software
Open Source Optical Coherence Tomography Software - Published in JOSS (2020)
QMRTools
QMRTools: a Mathematica toolbox for quantitative MRI analysis. - Published in JOSS (2019)
Tidytacos
Tidytacos: An R package for analyses on taxonomic composition of microbial communities - Published in JOSS (2025)
Plotrr
Plotrr: Functions for making visual exploratory data analysis with nested data easier. - Published in JOSS (2017)
Slicer-Liver
Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)
Easy3D
Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)
Gramm
Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)
GIBBON
GIBBON: The Geometry and Image-Based Bioengineering add-On - Published in JOSS (2018)