Scientific Software
Updated 4 months ago

Intracranial Electrode Location and Analysis in MNE-Python — Peer-reviewed • Rank 26.8 • Science 100%

Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)

Scientific Software
Updated 4 months ago

UMAP — Peer-reviewed • Rank 29.1 • Science 95%

UMAP: Uniform Manifold Approximation and Projection - Published in JOSS (2018)

Materials Science (40%) Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

PyVista — Peer-reviewed • Rank 27.2 • Science 95%

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

Yellowbrick — Peer-reviewed • Rank 26.0 • Science 95%

Yellowbrick: Visualizing the Scikit-Learn Model Selection Process - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

pyam — Peer-reviewed • Rank 19.7 • Science 100%

pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

Regl-Scatterplot — Peer-reviewed • Rank 16.2 • Science 100%

Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)

Biochemistry, Genetics and Molecular Biology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

PlatiPy — Peer-reviewed • Rank 15.1 • Science 100%

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)

Computer Science Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

OpenSpace — Peer-reviewed • Rank 14.2 • Science 100%

OpenSpace: An open-source astrovisualization framework - Published in JOSS (2017)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

textnets — Peer-reviewed • Rank 13.9 • Science 100%

textnets: A Python package for text analysis with networks - Published in JOSS (2020)

Scientific Software
Updated 4 months ago

Jupyter Scatter — Peer-reviewed • Rank 15.8 • Science 98%

Jupyter Scatter: Interactive Exploration of Large-Scale Datasets - Published in JOSS (2024)

Scientific Software
Updated 4 months ago

PVGeo — Peer-reviewed • Rank 13.4 • Science 100%

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

GemGIS - Spatial Data Processing for Geomodeling — Peer-reviewed • Rank 14.7 • Science 98%

GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)

Scientific Software
Updated 4 months ago

Netgraph — Peer-reviewed • Rank 17.3 • Science 95%

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)

Scientific Software
Updated 4 months ago

see — Peer-reviewed • Rank 19.0 • Science 93%

see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)

Scientific Software
Updated 4 months ago

FSharpGephiStreamer — Peer-reviewed • Rank 13.3 • Science 98%

FSharpGephiStreamer: An idiomatic bridge between F# and network visualization - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

Delve — Peer-reviewed • Rank 11.6 • Science 98%

Delve: Neural Network Feature Variance Analysis - Published in JOSS (2022)

Earth and Environmental Sciences (40%) Sociology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

MiscMetabar — Peer-reviewed • Rank 10.8 • Science 98%

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)

Scientific Software
Updated 4 months ago

modelStudio — Peer-reviewed • Rank 13.5 • Science 95%

modelStudio: Interactive Studio with Explanations for ML Predictive Models - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

archetypal — Peer-reviewed • Rank 13.4 • Science 95%

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)

Sociology Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

unifir — Peer-reviewed • Rank 9.2 • Science 98%

unifir: A Unifying API for Working with Unity in R - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Plonk — Peer-reviewed • Rank 9.2 • Science 98%

Plonk: Smoothed particle hydrodynamics analysis and visualization with Python - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

ewstools — Peer-reviewed • Rank 11.1 • Science 95%

ewstools: A Python package for early warning signals of bifurcations in time series data - Published in JOSS (2023)

Scientific Software
Updated 4 months ago

rempsyc — Peer-reviewed • Rank 5.9 • Science 100%

rempsyc: Convenience functions for psychology - Published in JOSS (2023)

Scientific Software
Updated 4 months ago

MicrobiomeR — Peer-reviewed • Rank 5.3 • Science 100%

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

RSMTool — Peer-reviewed • Rank 12.2 • Science 93%

RSMTool: collection of tools building and evaluating automated scoring models - Published in JOSS (2016)

Scientific Software
Updated 4 months ago

Kepler Mapper — Peer-reviewed • Rank 9.9 • Science 95%

Kepler Mapper: A flexible Python implementation of the Mapper algorithm. - Published in JOSS (2019)

Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

TDAstats — Peer-reviewed • Rank 11.3 • Science 93%

TDAstats: R pipeline for computing persistent homology in topological data analysis - Published in JOSS (2018)

Scientific Software
Updated 4 months ago

VisualTorch — Peer-reviewed • Rank 11.0 • Science 93%

VisualTorch: Streamlining Visualization for PyTorch Neural Network Architectures - Published in JOSS (2024)

Scientific Software
Updated 4 months ago

Psifr — Peer-reviewed • Rank 10.6 • Science 93%

Psifr: Analysis and visualization of free recall data - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

The plebeian Graph Library — Peer-reviewed • Rank 3.4 • Science 100%

The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)

Engineering (33%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

EDP — Peer-reviewed • Rank 4.8 • Science 98%

EDP: a program for projecting electron densities from VASP onto planes - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

mrivis — Peer-reviewed • Rank 9.8 • Science 93%

mrivis: Medical image visualization library for neuroscience in python - Published in JOSS (2018)

Scientific Software
Updated 4 months ago

TLViz — Peer-reviewed • Rank 4.4 • Science 98%

TLViz: Visualising and analysing tensor decomposition models with Python - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

cartoee — Peer-reviewed • Rank 7.9 • Science 93%

cartoee: Publication quality maps using Earth Engine - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

egtplot — Peer-reviewed • Rank 7.9 • Science 93%

egtplot: A Python Package for Three-Strategy Evolutionary Games - Published in JOSS (2018)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Simulation Decomposition in Python — Peer-reviewed • Rank 7.8 • Science 93%

Simulation Decomposition in Python - Published in JOSS (2024)

Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Visualizing alpha-helical peptides in R with helixvis — Peer-reviewed • Rank 6.9 • Science 93%

Visualizing alpha-helical peptides in R with helixvis - Published in JOSS (2018)

Scientific Software
Updated 4 months ago

Open Source Optical Coherence Tomography Software — Peer-reviewed • Rank 5.9 • Science 93%

Open Source Optical Coherence Tomography Software - Published in JOSS (2020)

Scientific Software
Updated 4 months ago

QMRTools — Peer-reviewed • Rank 5.6 • Science 93%

QMRTools: a Mathematica toolbox for quantitative MRI analysis. - Published in JOSS (2019)

Scientific Software
Updated 4 months ago

Tidytacos — Peer-reviewed • Rank 4.7 • Science 93%

Tidytacos: An R package for analyses on taxonomic composition of microbial communities - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Plotrr — Peer-reviewed • Rank 2.5 • Science 95%

Plotrr: Functions for making visual exploratory data analysis with nested data easier. - Published in JOSS (2017)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Slicer-Liver — Peer-reviewed • Science 93%

Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 4 months ago

Easy3D — Peer-reviewed • Science 93%

Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)

Scientific Software
Updated 4 months ago

Gramm — Peer-reviewed • Science 95%

Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Updated 4 months ago

pypluto • Science 93%

A data analysis Python package for the PLUTO code

Scientific Software
Updated 4 months ago

GIBBON — Peer-reviewed • Science 95%

GIBBON: The Geometry and Image-Based Bioengineering add-On - Published in JOSS (2018)

Physics (40%) Economics (40%)
Scientific Software · Peer-reviewed