Projects

Updated 6 months ago

cellfinder • Rank 15.7 • Science 67%

Automated 3D cell detection in very large images

cell-detection deep-learning image-analysis imaging microscopy neuroanatomy neuroscience python

Updated 6 months ago

https://github.com/brainglobe/cellfinder-napari • Rank 10.5 • Science 23%

Efficient cell detection in large images using cellfinder in napari

cell-detection cellfinder keras napari napari-plugin object-detection resnet tensorflow

Updated 6 months ago

https://github.com/bmcv/superdsm • Science 36%

SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

cell-counting cell-detection cell-segmentation image-segmentation instance-segmentation object-detection object-segmentation

Updated 6 months ago

https://github.com/alphonsg/epic-bbox-cell-tracking • Science 23%

Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.

cell-detection cell-migration cell-tracking deep-learning object-detection object-tracking

Updated 6 months ago

softctm • Science 54%

SoftCTM won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.

cell-detection histology histopathology histopathology-image-analysis tumor-cellularity-estimation tumor-purity-estimation

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

cellfinder • Rank 15.7 • Science 67%

https://github.com/brainglobe/cellfinder-napari • Rank 10.5 • Science 23%

https://github.com/bmcv/superdsm • Science 36%

https://github.com/alphonsg/epic-bbox-cell-tracking • Science 23%

softctm • Science 54%