Updated 6 months ago

cellpose • Rank 22.8 • Science 59%

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Updated 6 months ago

yeast-in-microstructures-dataset • Rank 3.7 • Science 54%

Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].

Updated 6 months ago

tyc-dataset • Rank 2.3 • Science 54%

Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].

Updated 6 months ago

cell-detr • Science 54%

Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].

Updated 6 months ago

https://github.com/bmcv/superdsm • Science 36%

SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

Updated 6 months ago

spatialvpt • Science 65%

Segmentation and QC workflow for MERSCOPE using vizgen-postprocessing tool

Updated 5 months ago

https://github.com/chenliu-1996/diffkillr • Science 36%

[ICASSP 2025 Oral] DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images