human-cell-atlas imaging python transcriptomics

Engineering (40%)

hidivelab hubmap imaging ome-tiff openmicroscopy viv zarr

data-visualization hidivelab hubmap imaging kharchenkolab single-cell vitessce zarr

emscripten imaging input-output insight-toolkit itk itk-module javascript open-science reproducible-science visualization wasi wasm webassembly

cell-detection deep-learning image-analysis imaging microscopy neuroanatomy neuroscience python

data-analysis imaging neuroscience

imaging multiscale ngff ome-zarr-converter python scientific-computing xarray

image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization

computational-optics deep-learning differentiable-optics diffraction fourier-optics holography imaging inverse-design machine-learning microscopy optical-neural-network optics physics pytorch wave-optics

deep-kernel-learning deep-learning electron-microscopy ensemble-learning fully-convolutional-networks google-colaboratory imaging jupyter-notebook machine-learning materials materials-science microscopy multivariate-analysis pytorch scanning-probe-microscopy semantic-segmentation variational-autoencoders

afm atom atomic-force-microscopy electron-microscopy fft imaging infrared machine-learning materials-science microscopy raman scanning scanning-probe-microscopy scanning-tunnelling-microscopy signal-processing spectroscopy statistics stem stm visualization

fish image-processing imaging molecularcartography nextflow nf-core pipeline segmentation single-cell spatial transcriptomics workflow

bioconductor imaging r shiny visualization

camera-response-function hdr hdr-compression high-dynamic-range imaging inverse-tonemapping matlab reverse-tone-mapping tone-mapping tonemapping

epfl imaging ontology sdsc

computer-vision image-processing imaging

data-wrangling hyperspectral imaging infrared nmr r-package raman spectroscopy uv-vis xrf

data-science dna epigenomics gcp genomics google-sheets imaging plots rna-seq terra

afm imaging jupyter jupyter-notebook jupyterlite notebook

imaging oct windows

adi astronomy hci imaging reduction

data-visualization ggplot2 imaging neuroimaging neuroscience r

biological-data-analysis imaging reader

imaging python python3 tomography

digital-signal-processing imaging matlab matlab-toolbox prototyping signal-processing toolbox ultrasound ultrasound-imaging

3d-images augment-images augmentation deep-learning gpu imaging machine-learning medical-imaging python pytorch

ai cancer computervision imaging oncolocy research

citizen citizen-science imaging microscope microscope-platform microscopy ocean oceanography plankton planktoscope raspberry-pi-4 raspberry-pi-camera science water

digital-pathology histology imaging microscopy nextflow quality-control

brain-imaging brain-mri dicom fmri imaging medical-imaging neuroimaging nifti-format python viewer

imaging python synthetic-dataset-generation x-ray-fluorescence

brain-imaging brain-mri colab deep-learning fastai gpu imaging machine-learning medical-imaging neuroimaging nifti python pytorch

ai cloud-computing imaging kubernetes medical-image-processing medical-imaging platform

computational-imaging computed-tomography deblurring deep-equilibrium-models deep-learning diffusion-models image-processing image-reconstruction imaging inverse-problems mri plug-and-play super-resolution unfolded

collection datasets imaging learning list medical medical-imaging