Projects

Updated 10 months ago

A cool place to store your Hi-C

3d-genome bioinformatics chromatin contact-matrix cooler file-format genomics hdf5 hi-c ngs python sparse

Updated 9 months ago

An easy-to-use Hi-C data processing software supporting distributed computation.

4d-nucleome-network arima bioinformatics chromosome-conformation-capture cooler hi-c pairs pipeline python

Updated 9 months ago

Lightweight converter between hic and cool contact matrices.

bioinformatics contact-matrices converter cooler hi-c juicer

Updated 9 months ago

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

3d-genome cooler genomic-data-analysis genomics hic

Updated 10 months ago

Python bindings for hictk: read and write .cool and .hic files directly from Python

3d-genomics bindings bioinformatics cooler genomics hi-c hic hictk python3

Updated 10 months ago

R bindings for hictk: read .cool and .hic files directly from R

3d-genomics bindings bioinformatics cooler genomics hi-c hic hictk r

Updated 10 months ago

Blazing fast toolkit to work with .hic and .cool files

3d-genomics bioinformatics cli-application conversion cooler cxx cxx-library cxx17 genomics hi-c hic hictk

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