swiftsimio — Peer-reviewed • Rank 15.1 • Science 95%

swiftsimio: A Python library for reading SWIFT data - Published in JOSS (2020)

h5fortran — Peer-reviewed • Rank 5.8 • Science 98%

h5fortran: object-oriented polymorphic Fortran interface for HDF5 file IO - Published in JOSS (2021)

Utopia — Peer-reviewed • Rank 8.6 • Science 94%

Utopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systems - Published in JOSS (2020)

h5preserve — Peer-reviewed • Rank 7.2 • Science 93%

h5preserve: Thin wrapper around h5py, inspired by camel - Published in JOSS (2018)

io.jhdf:jhdf • Rank 21.2 • Science 77%

A pure Java HDF5 library

openpmd-api • Rank 19.4 • Science 77%

:floppy_disk: C++ & Python API for Scientific I/O

cooler • Rank 17.7 • Science 77%

A cool place to store your Hi-C

pyiron • Rank 16.0 • Science 77%

pyiron - an integrated development environment (IDE) for computational materials science.

legend-pydataobj • Rank 15.3 • Science 77%

LEGEND Python Data Objects

legend-daq2lh5 • Rank 11.6 • Science 77%

Convert digitizer data to LEGEND HDF5

https://github.com/silx-kit/silx • Rank 21.2 • Science 59%

silx toolkit

hsds • Rank 16.1 • Science 64%

Cloud-native, service based access to HDF data

mdsuite • Rank 10.8 • Science 67%

A post-processing engine for particle simulations

imas2xarray • Rank 7.5 • Science 67%

Imas2xarray is a python library for reading and writing IMAS data in hdf5 format using xarray

dantro • Rank 4.2 • Science 67%

dantro is a Python package to handle, transform, and visualize hierarchically structured data. Docs @ https://dantro.readthedocs.io — NOTE: This repository is a READ-ONLY-MIRROR of the actual development repository; for open issues and MRs, see there:

https://github.com/ornladios/adios2 • Rank 19.3 • Science 49%

Next generation of ADIOS developed in the Exascale Computing Program

pyrams • Rank 2.6 • Science 64%

A set of tools for working with RAMS model output data

scibasic • Rank 17.4 • Science 49%

sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows — Peer-reviewed • Rank 6.9 • Science 59%

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows - Published in JOSS (2021)

externdata • Rank 7.0 • Science 57%

:page_facing_up: Modelica library for data I/O of CSV, INI, JSON, MATLAB MAT, SSV, TIR, Excel XLS/XLSX and XML files

cgns • Rank 9.9 • Science 54%

The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. All development work and bug fixes should be based off the 'develop' branch, CGNS uses the branching model Gitflow.

h5rdmtoolbox • Rank 4.3 • Science 59%

Supporting a FAIR Research Data lifecycle using Python and HDF5.

nco • Rank 9.2 • Science 54%

netCDF Operators

metador-core • Rank 8.1 • Science 54%

Core of Metador, the FAIR metadata-first research data management framework.

h5bench • Rank 7.9 • Science 54%

A benchmark suite for measuring HDF5 performance.

https://github.com/vaexio/vaex • Rank 24.4 • Science 36%

Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀

h5netcdf • Rank 23.0 • Science 36%

Pythonic interface to netCDF4 via h5py

h5fortran-mpi • Rank 3.2 • Science 54%

HDF5-MPI parallel Fortran object-oriented interface

matlab-stdlib • Rank 2.5 • Science 54%

HDF5, NetCDF4, fileio, system functions that act as an unofficial "stdlib" for Matlab.

https://github.com/rootpy/rootpy • Rank 15.5 • Science 33%

A pythonic interface for the ROOT libraries on top of the PyROOT bindings.

hdf5 • Rank 12.0 • Science 36%

Official HDF5® Library Repository

rhdf5 • Rank 23.5 • Science 23%

Package providing an interface between HDF5 and R

Rhdf5lib • Rank 20.1 • Science 23%

Distribution of the HDF5 library in an R package

npy2bdv • Rank 9.6 • Science 33%

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.

awips2 • Rank 6.3 • Science 36%

Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.

https://github.com/cgohlke/cmapfile • Rank 4.5 • Science 36%

Write Chimera Map (CMAP) files.

rhdf5filters • Rank 17.3 • Science 23%

Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.

antaresread • Rank 13.0 • Science 26%

Import, manipulate and explore the results of an Antares simulation

https://github.com/xtensor-stack/xtensor-io • Rank 10.0 • Science 23%

xtensor plugin to read and write images, audio files, numpy (compressed) npz and HDF5

argos • Rank 13.5 • Science 13%

Argos: a data viewer that can read HDF5, NetCDF4, and other file formats.

https://github.com/bluebrain/morphology-documentation • Rank 2.5 • Science 23%

Morphology Specifications used at BBP

https://github.com/iagappel/turbx • Rank 0.7 • Science 23%

Tools for analysis of turbulent flow datasets

https://github.com/ami-iit/matio-cpp • Rank 6.1 • Science 13%

A C++ wrapper of the matio library, with memory ownership handling, to read and write .mat files.

https://github.com/alleninstitute/scrattch.io • Rank 4.2 • Science 10%

Functions for handling RNA-seq files and formats as input and output for scrattch functions.

hdf5view • Science 67%

Simple Qt/Python based viewer for HDF5 files

GNU Data Language 1.0 — Peer-reviewed • Science 95%

GNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVE - Published in JOSS (2022)

https://github.com/berquist/eg • Science 26%

geoslicer • Science 39%

Open source digital rocks software platform for micro-CT, CT, thin sections and borehole image analysis. Includes tools for: annotation, AI, HPC, porous media flow simulation, porosity analysis, permeability analysis and much more.

deepicedrain • Science 23%

Mapping and monitoring deep subglacial water activity in Antarctica using remote sensing and machine learning, with ICESat-2!

h5tools-matlab • Science 54%

A toolbox of high-level functions for working with HDF5 files in MATLAB

spaceborne_lidar • Science 67%

Python scripts for extracting GEDI and ICESat-2 data from HDF to shapefiles