Projects

Scientific Software

Updated 9 months ago

Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes - Published in JOSS (2022)

bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd

Mathematics (37%)

Scientific Software · Peer-reviewed

Updated 9 months ago

A Cython MeCab wrapper for fast, pythonic Japanese tokenization and morphological analysis.

cython-wrapper japanese mecab nlp tokenizer

Updated 9 months ago

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

bioinformatics cython-library cython-wrapper genomics needleman-wunsch python-bindings python-library sequence-alignment simd smith-waterman

Updated 9 months ago

Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.

bioinformatics catalytic-site cython-wrapper enzyme pdb protein-structure python python-interface python-library

Updated 9 months ago

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

bioinformatics cython-library cython-wrapper dna-repeats genomics python-bindings python-library simd

Updated 9 months ago

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

alignment-trimming bioinformatics cython-wrapper genomics multiple-sequence-alignment python python-interface python-library simd

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