pyskani
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
pyfastani
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
sotb-wrapper
This repo shows how to use SEISCOPE optimization toolbox Fortran code from Python
https://github.com/althonos/pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
https://github.com/althonos/pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
https://github.com/althonos/pytantan
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
https://github.com/althonos/diced
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.
https://github.com/althonos/pymuscle5
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
https://github.com/althonos/pyncbitk
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
pico_tree
A C++ header only library for fast nearest neighbor and range searches using a KdTree. It supports interfacing with Eigen, OpenCV, and custom data types and provides optional Python bindings.