Pyrodigal
Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes - Published in JOSS (2022)
usearch
Fast Open-Source Search & Clustering engine × for Vectors & Arbitrary Objects × in C++, C, Python, JavaScript, Rust, Java, Objective-C, Swift, C#, GoLang, and Wolfram 🔍
octotiger
Astrophysics program simulating the evolution of star systems based on the fast multipole method on adaptive Octrees
ncnn
ncnn is a high-performance neural network inference framework optimized for the mobile platform
https://github.com/althonos/lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
https://github.com/manodeep/corrfunc
⚡️⚡️⚡️Blazing fast correlation functions on the CPU.
https://github.com/libxsmm/libxsmm
Library for specialized dense and sparse matrix operations, and deep learning primitives.
https://github.com/althonos/pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
ucall
Web Serving and Remote Procedure Calls at 50x lower latency and 70x higher bandwidth than FastAPI, implementing JSON-RPC & REST over io_uring ☎️
https://github.com/bluescarni/heyoka.py
Python library for ODE integration via Taylor's method and LLVM
librapid
A highly optimised C++ library for mathematical applications and neural networks.
SNPRelate
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
https://github.com/predict-idlab/tsdownsample
High-performance time series downsampling algorithms for visualization
https://github.com/althonos/pytantan
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
https://github.com/bytedance/sonic
A blazingly fast JSON serializing & deserializing library
https://github.com/ashvardanian/simsimd
Up to 200x Faster Dot Products & Similarity Metrics — for Python, Rust, C, JS, and Swift, supporting f64, f32, f16 real & complex, i8, and bit vectors using SIMD for both AVX2, AVX-512, NEON, SVE, & SVE2 📐
https://github.com/althonos/pytrimal
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
fast_frechet
Comparison of different (fast) discrete Fréchet distance implementations in C++ and CUDA.
vir-simd
improve the usage experience of std::experimental::simd (Parallelism TS 2)
wasm-types
Wasm-types offers a standard library for numerical and scientific computation in JavaScript and C, designed for seamless use in browsers and Node.js. 🚀📦
https://github.com/gregyjames/tsunami
A High Performance C# wrapper that allows you to get the benefits of SIMD Intrinsics on List<T>.
parallel-etudes
Parallel programming assignments using OpenMP, MPI and CUDA/OpenCL
https://github.com/copyleftdev/ziffy
🚀 Ziffy: High-performance similarity comparison engine with SIMD optimizations for healthcare, finance, and data integrity. Features 3-stage cascade processing, dental EDI benchmarks, and REST API endpoints.
lo-shu
This is a project I've been working on in Rust, exploring concepts behind Lo Shu, or more commonly, magic squares. This project will aim to solve various problems in combinatorics utilizing accellerated computing as well as enhance my understanding of the Rust Programming Language.
https://github.com/cwida/pdx
⚡ Faster similarity search with PDX: A vertical data layout for vectors
ssw
🚀 R interface for SSW, a fast implementation of the Smith-Waterman algorithm using SIMD