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datastew
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
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nplinker
A python framework for microbial natural products data mining by integrating genomics and metabolomics data
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harmony
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
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harmony_examples
Example Jupyter notebook and R scripts using Harmony in real research problems
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datahub
Self-hostable, open-source engine for reproducible data harmonization, dataset building & exploration
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https://github.com/dfornika/amrhike
Proof-of-concept for storing and querying harmonized AMR Genomic Analysis Results in datahike
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https://github.com/cidgoh/pathogen-genomics-package
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates