harmony
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
https://github.com/cidgoh/dataharmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
traitdataform
A package to manage and compile functional trait data into predefined templates
ComBatFamQC
Streamline interactive batch effect diagnostics, harmonization, and post-harmonization downstream analysis to greatly simplify the data harmonization process and improve transparency and reproducibility.
https://github.com/cidgoh/grdi_amr_one_health
A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
https://github.com/cidgoh/cancogen_contextual_data_specification
A data specification for harmonizing One Health Canadian COVID pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.