Projects

Updated 6 months ago

pysam • Rank 29.1 • Science 46%

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

bioinformatics htslib ngs python

Updated 6 months ago

cyvcf2 • Rank 21.2 • Science 23%

cython + htslib == fast VCF and BCF processing

bioinformatics cython genomics htslib vcf

Updated 5 months ago

https://github.com/brentp/hts-nim • Science 26%

nim wrapper for htslib for parsing genomics data files

bioinformatics genomics high-throughput-sequencing htslib nim nim-lang

Updated 5 months ago

https://github.com/cancerit/cgpbigwig • Science 13%

BigWig manpulation tools using libBigWig and htslib

bigwig bioinformatics bioinformatics-analysis coverage htslib libbigwig

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Open Source Science

pysam • Rank 29.1 • Science 46%

cyvcf2 • Rank 21.2 • Science 23%

https://github.com/brentp/hts-nim • Science 26%

https://github.com/cancerit/cgpbigwig • Science 13%