MitoHEAR
MitoHEAR: an R package for the estimation and downstream statistical analysis of the mitochondrial DNA heteroplasmy calculated from single-cell datasets - Published in JOSS (2022)
codonu
A python project for analysis of codon usage for gene or genome analysis
pbxplore
A suite of tools to explore protein structures with Protein Blocks :snake:
rnalysis
Analyze your RNA sequencing data without writing a single line of code
https://github.com/biojulia/genomegraphs.jl
A modern genomics framework for julia
https://github.com/cancerit/cgpbigwig
BigWig manpulation tools using libBigWig and htslib
minmutfinder
Tool written in Python and Bash implemented in a Nextflow pipeline that accurately identifies mutations and assesses their frequencies, accounting for multiple nucleotide mutations occurring within a single codon. Additionally, it can annotate mutations associated to phenotypical changes in viral populations based on user-supplied datasets.
https://github.com/ahmedmoustafa/als
Analysis of the gut microbiome of Amyotrophic Lateral Sclerosis (ALS) patients using the DADA2 workflow
https://github.com/batoolmm/mitohear
MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets.