Scientific Software
Updated 10 months ago

multipers — Peer-reviewed • Rank 13.6 • Science 100%

multipers: Multiparameter Persistence for Machine Learning - Published in JOSS (2024)

Sociology Artificial Intelligence and Machine Learning Mathematics (45%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Triumvirate — Peer-reviewed • Rank 9.9 • Science 98%

Triumvirate: A Python/C++ package for three-point clustering measurements - Published in JOSS (2023)

Scientific Software
Updated 10 months ago

Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape — Peer-reviewed • Rank 11.2 • Science 95%

Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape - Published in JOSS (2023)

Mathematics Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

PyStokes — Peer-reviewed • Rank 10.2 • Science 95%

PyStokes: phoresis and Stokesian hydrodynamics in Python - Published in JOSS (2020)

Scientific Software
Updated 10 months ago

root_numpy — Peer-reviewed • Rank 7.7 • Science 95%

root_numpy: The interface between ROOT and NumPy - Published in JOSS (2017)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

PyFPT — Peer-reviewed • Rank 7.1 • Science 95%

PyFPT: A Python package for first-passage times - Published in JOSS (2023)

Mathematics (37%)
Scientific Software · Peer-reviewed
Updated 10 months ago

connected-components-3d • Rank 20.2 • Science 77%

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

Updated 10 months ago

cpprb • Rank 14.3 • Science 67%

Fast Flexible Replay Buffer Library (Mirror repository of https://gitlab.com/ymd_h/cpprb)

Updated 10 months ago

fiona • Rank 26.9 • Science 54%

Fiona reads and writes geographic data files

Updated 10 months ago

treeple • Rank 13.4 • Science 67%

Scikit-learn compatible decision trees beyond those offered in scikit-learn

Updated 10 months ago

pybbi • Rank 12.7 • Science 67%

Python bindings to UCSC BigWig and BigBed library

Updated 10 months ago

cython • Rank 36.7 • Science 36%

The most widely used Python to C compiler

Updated 10 months ago

optical-beams-meep • Rank 5.3 • Science 67%

Simulation of reflection and refraction of polarized opticial beams at plane and curved dielectric interfaces.

Updated 10 months ago

pypolyline • Rank 4.5 • Science 67%

Fast Google Polyline encoding and decoding using a Rust binary

Updated 10 months ago

pyzmq • Rank 34.0 • Science 36%

PyZMQ: Python bindings for zeromq

Updated 10 months ago

dd • Rank 18.4 • Science 49%

Binary Decision Diagrams (BDDs) in pure Python and Cython wrappers of CUDD, Sylvan, and BuDDy

Updated 10 months ago

rasterio • Rank 28.4 • Science 36%

Rasterio reads and writes geospatial raster datasets

Updated 10 months ago

python-stratify • Rank 6.4 • Science 57%

Vectorized interpolators for Nd atmospheric and oceanographic data

Updated 10 months ago

https://github.com/fluiddyn/transonic • Rank 13.8 • Science 36%

:rocket: Make your Python code fly at transonic speeds!

Updated 10 months ago

handy • Rank 2.6 • Science 44%

Some handy python functions for statistics, computation and plotting (which are missed in numpy and matplotlib).

Updated 10 months ago

vice • Rank 10.2 • Science 36%

A python package designed to run numerical simulations of galactic chemical evolution

Updated 10 months ago

cyvcf2 • Rank 21.2 • Science 23%

cython + htslib == fast VCF and BCF processing

Updated 10 months ago

pydensecrf • Rank 18.4 • Science 23%

Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.

Updated 10 months ago

liftover • Rank 14.4 • Science 13%

liftover for python, made fast with cython

Updated 10 months ago

minfo • Rank 6.0 • Science 10%

Mutual information estimator with adaptive partitioning algorithm (C++/OpenMP accelerated).

Updated 10 months ago

https://github.com/hansalemaos/cythonflatiter • Science 13%

Locates values in NumPy Arrays with Cython

Updated 10 months ago

pyfhel • Science 54%

PYthon For Homomorphic Encryption Libraries, perform encrypted computations such as sum, mult, scalar product or matrix multiplication in Python, with NumPy compatibility. Uses SEAL/PALISADE as backends, implemented using Cython.