multipers
multipers: Multiparameter Persistence for Machine Learning - Published in JOSS (2024)
Triumvirate
Triumvirate: A Python/C++ package for three-point clustering measurements - Published in JOSS (2023)
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape - Published in JOSS (2023)
PyStokes
PyStokes: phoresis and Stokesian hydrodynamics in Python - Published in JOSS (2020)
PyFPT
PyFPT: A Python package for first-passage times - Published in JOSS (2023)
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
cpprb
Fast Flexible Replay Buffer Library (Mirror repository of https://gitlab.com/ymd_h/cpprb)
treeple
Scikit-learn compatible decision trees beyond those offered in scikit-learn
https://github.com/pypr/pysph
A framework for Smoothed Particle Hydrodynamics in Python
optical-beams-meep
Simulation of reflection and refraction of polarized opticial beams at plane and curved dielectric interfaces.
python-stratify
Vectorized interpolators for Nd atmospheric and oceanographic data
https://github.com/martineastwood/penaltyblog
⚽ High-performance football analytics toolkit: build data pipelines, scrape data, model matches, rank teams, and bet smarter | Powered by pena.lt/y/blog 🚀
https://github.com/fluiddyn/transonic
:rocket: Make your Python code fly at transonic speeds!
handy
Some handy python functions for statistics, computation and plotting (which are missed in numpy and matplotlib).
vice
A python package designed to run numerical simulations of galactic chemical evolution
https://github.com/seung-lab/fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
pydensecrf
Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs with gaussian edge potentials.
minfo
Mutual information estimator with adaptive partitioning algorithm (C++/OpenMP accelerated).
https://github.com/hansalemaos/cythonflatiter
Locates values in NumPy Arrays with Cython
pyfhel
PYthon For Homomorphic Encryption Libraries, perform encrypted computations such as sum, mult, scalar product or matrix multiplication in Python, with NumPy compatibility. Uses SEAL/PALISADE as backends, implemented using Cython.