Scientific Software
Updated 6 months ago

Rasusa — Peer-reviewed • Rank 17.1 • Science 93%

Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

'Sequana' — Peer-reviewed • Rank 13.5 • Science 95%

'Sequana': a Set of Snakemake NGS pipelines - Published in JOSS (2017)

Artificial Intelligence and Machine Learning (39%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

openBURST — Peer-reviewed • Rank 1.4 • Science 95%

openBURST: Real-time air surveillance simulation and analysis for active and passive sensors - Published in JOSS (2024)

Political Science Computer Science
Scientific Software · Peer-reviewed
Updated 6 months ago

covr • Rank 25.2 • Science 36%

Test coverage reports for R

Updated 6 months ago

codecov • Rank 30.4 • Science 23%

Python report uploader for Codecov

Updated 5 months ago

https://github.com/cicirello/examples-jacoco-badge-generator • Rank 2.2 • Science 26%

Sample Java project with runnable workflows demonstrating the cicirello/jacoco-badge-generator GitHub Action

Updated 5 months ago

https://github.com/clinical-genomics/chanjo • Rank 15.2 • Science 13%

Chanjo provides a better way to analyze coverage data in clinical sequencing.

Updated 5 months ago

https://github.com/brentp/goleft • Rank 14.5 • Science 13%

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Updated 6 months ago

kettle-soup-cover • Science 44%

A Covered Kettle of SOUP, A Code Coverage Meta Gem

Updated 6 months ago

bamtocov • Science 67%

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Updated 5 months ago

https://github.com/brentp/mosdepth • Science 26%

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Updated 6 months ago

sleacr • Science 54%

Simplified Lot Quality Assurance Sampling Evaluation of Access and Coverage (SLEAC) Tools

Updated 5 months ago

https://github.com/assert-kth/flacoco • Science 36%

FLACOCO: Fault Localization for Java based on Industry-grade Coverage http://arxiv.org/pdf/2111.12513