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Open Source Science

Scientific Software
Updated 6 months ago

yaml2sbml — Peer-reviewed • Rank 8.4 • Science 95%

yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 6 months ago

moccasin • Science 41%

MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.

Scientific Software
Updated 6 months ago

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 6 months ago

exactodereduction.jl • Science 31%

Exact reduction of ODE models via linear transformations