Projects

Updated 6 months ago

convert-pheno • Science 57%

A software toolkit for the interconversion of standard data models for phenotypic data

beacon beacon-v2 bff biomedical-informatics cdisc cdisc-odm cnag convert convert-pheno csv ehr ehr-data ehr-phenotyping health-data omop omop-cdm phenopacket phenopackets-v2 pxf redcap

Updated 6 months ago

https://github.com/cnag-biomedical-informatics/pheno-ranker • Science 39%

Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2, as well as CSV.

beacon-v2 bff bioinformatics biomedical-informatics cnag csv data-exploration ehr ga4gh genomics health-data json phenopackets-v2 pxf qrcode semantic-similarity semantic-similarity-measures vcf yaml

Updated 6 months ago

https://github.com/cnag-biomedical-informatics/beacon2-cbi-tools • Science 13%

Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)

23andme beacon beacon-friendly-format beacon-v2 beacon2-reference-implementation beacon2-ri beacon2-ri-tools bff bff-portal browser cnag data-exchange json microarray mongodb phenopackets-v2 pxf snp vcf

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Data

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Open Source Science

convert-pheno • Science 57%

https://github.com/cnag-biomedical-informatics/pheno-ranker • Science 39%

https://github.com/cnag-biomedical-informatics/beacon2-cbi-tools • Science 13%