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Open Source Science

Updated 6 months ago

yaib • Rank 10.1 • Science 77%

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

Updated 6 months ago

ukbb-ehr-data • Rank 3.3 • Science 57%

Prepare UK Biobank Electronic Health Record data for research

Updated 6 months ago

https://github.com/theislab/ehrdata • Science 26%

A datastructure for EHR data

Updated 6 months ago

trud • Science 36%

R package wrapper for the NHS TRUD API

Updated 6 months ago

https://github.com/cnag-biomedical-informatics/pheno-ranker • Science 39%

Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2, as well as CSV.

Updated 6 months ago

growthcleanr • Science 26%

R package for cleaning anthropometric (height and weight) data from electronic health record systems.

Updated 6 months ago

https://github.com/aehrc/smart-ehr-launcher • Science 26%

An EHR simulator dashboard testing tool to launch SMART on FHIR apps