org.biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
BioStructures
A Julia package to read, write and manipulate macromolecular structures
MIToS
A Julia package to analyze protein sequences, structures, and evolutionary information
Bio3DView
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
https://github.com/deeprank/ponder
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
ProteinEnsembles
Generate and perturb protein structural ensembles using the ExProSE algorithm