Updated 9 months ago
https://github.com/broadinstitute/tangram
Spatial alignment of single cell transcriptomic data.
Updated 9 months ago
spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Updated 9 months ago
visiumStitched
R package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.