Projects

Updated 10 months ago

mixscape_seurat • Rank 3.8 • Science 67%

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

bioinformatics biomedical-data-science perturbation-analysis sccrispr-seq scrna-seq single-cell snakemake snrna-seq visualization workflow

Updated 10 months ago

dea_seurat • Rank 3.2 • Science 67%

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

bioinformatics biomedical-data-science differential-expression-analysis scrna-seq single-cell snakemake snrna-seq visualization volcano-plot workflow

Updated 10 months ago

https://github.com/broadinstitute/tangram • Rank 16.0 • Science 54%

Spatial alignment of single cell transcriptomic data.

computational-biology gene-expression scrna-seq snrna-seq spatial-data visium

Updated 10 months ago

TREG • Rank 12.5 • Science 46%

Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

bioconductor deconvolution rnascope rstats scrna-seq smfish snrna-seq treg

Updated 10 months ago

scrnaseq_processing_seurat • Science 67%

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

10xgenomics bioinformatics biomedical-data-science cite-seq sccrispr-seq scrna-seq single-cell snakemake snrna-seq visualization workflow

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

mixscape_seurat • Rank 3.8 • Science 67%

dea_seurat • Rank 3.2 • Science 67%

https://github.com/broadinstitute/tangram • Rank 16.0 • Science 54%

TREG • Rank 12.5 • Science 46%

scrnaseq_processing_seurat • Science 67%