The drake R package
The drake R package: a pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2018)
The targets R package
The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2021)
Using the tidyverse with terra objects
Using the tidyverse with terra objects: the tidyterra package - Published in JOSS (2023)
bayestestR
bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework - Published in JOSS (2019)
visdat
visdat: Visualising Whole Data Frames - Published in JOSS (2017)
qualtRics
qualtRics: retrieve survey data using the Qualtrics API - Published in JOSS (2018)
Managing Larger Data on a GitHub Repository
Managing Larger Data on a GitHub Repository - Published in JOSS (2018)
Fast, Consistent Tokenization of Natural Language Text
Fast, Consistent Tokenization of Natural Language Text - Published in JOSS (2018)
Generating CodeMeta Metadata for R Packages
Generating CodeMeta Metadata for R Packages - Published in JOSS (2017)
insight
insight: A Unified Interface to Access Information from Model Objects in R - Published in JOSS (2019)
osmdata
osmdata - Published in JOSS (2017)
ssdtools v2
ssdtools v2: An R package to fit Species Sensitivity Distributions - Published in JOSS (2025)
datawizard
datawizard: An R Package for Easy Data Preparation and Statistical Transformations - Published in JOSS (2022)
see
see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)
tidyhydat
tidyhydat: Extract and Tidy Canadian Hydrometric Data - Published in JOSS (2017)
measr
measr: Bayesian psychometric measurement using Stan - Published in JOSS (2023)
coalitions
coalitions: Coalition probabilities in multi-party democracies - Published in JOSS (2018)
cffr
cffr: Generate Citation File Format Metadata for R Packages - Published in JOSS (2021)
GSODR
GSODR: Global Summary Daily Weather Data in R - Published in JOSS (2017)
Rdataretriever
Rdataretriever: R Interface to the Data Retriever - Published in JOSS (2021)
FielDHub
FielDHub: A Shiny App for Design of Experiments in Life Sciences - Published in JOSS (2021)
USAboundaries
USAboundaries: Historical and Contemporary Boundaries of the United States of America - Published in JOSS (2018)
nomisr
nomisr: Access 'Nomis' UK Labour Market Data - Published in JOSS (2018)
terrainr
terrainr: An R package for creating immersive virtual environments - Published in JOSS (2022)
jstor
jstor: Import and Analyse Data from Scientific Texts - Published in JOSS (2018)
Zoomerjoin
Zoomerjoin: Superlatively-Fast Fuzzy Joins - Published in JOSS (2023)
quadkeyr
quadkeyr: Tools for converting QuadKey-identified datasets (Microsoft's Bing Maps Tile System) into raster images and analyzing Meta (Facebook) Mobility Data - Published in JOSS (2024)
comorbidity
comorbidity: An R package for computing comorbidity scores - Published in JOSS (2018)
ijtiff
ijtiff: An R package providing TIFF I/O for ImageJ users - Published in JOSS (2018)
hydroscoper
hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information - Published in JOSS (2018)
mikropml
mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines - Published in JOSS (2021)
getCRUCLdata
getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R - Published in JOSS (2017)
verdata
verdata: An R package for analyzing data from the Truth Commission in Colombia - Published in JOSS (2024)
shapr
shapr: An R-package for explaining machine learning models with dependence-aware Shapley values - Published in JOSS (2019)
gaussplotR
gaussplotR: Fit, Predict and Plot 2D-Gaussians in R - Published in JOSS (2021)
geostan
geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format - Published in JOSS (2024)
experDesign
experDesign: stratifying samples into batches with minimal bias - Published in JOSS (2021)
daiquiri
daiquiri: Data Quality Reporting for Temporal Datasets - Published in JOSS (2022)
rsimsum
rsimsum: Summarise results from Monte Carlo simulation studies - Published in JOSS (2018)
phylogram
phylogram: an R package for phylogenetic analysis with nested lists - Published in JOSS (2018)
wdpar
wdpar: Interface to the World Database on Protected Areas - Published in JOSS (2022)
Suppdata
Suppdata: Downloading Supplementary Data from Published Manuscripts - Published in JOSS (2018)
jointVIP
jointVIP: Prioritizing variables in observational study design with joint variable importance plot in R - Published in JOSS (2024)
piar
piar: Price Index Aggregation in R - Published in JOSS (2024)
rempsyc
rempsyc: Convenience functions for psychology - Published in JOSS (2023)
rcites
rcites: An R package to access the CITES Speciesplus database - Published in JOSS (2018)
individual
individual: An R package for individual-based epidemiological models - Published in JOSS (2021)
workloopR
workloopR: Analysis of work loops and other data from muscle physiology experiments in R - Published in JOSS (2019)
MicrobiomeR
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows - Published in JOSS (2019)
lavaanExtra
lavaanExtra: Convenience Functions for Package lavaan - Published in JOSS (2023)
autoplotly
autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
weatherOz
weatherOz: An API Client for Australian Weather and Climate Data Resources in R - Published in JOSS (2024)
archeoViz
archeoViz: an R package for the Visualisation, Exploration, and Web Communication of Archaeological Spatial Data - Published in JOSS (2023)
The jagstargets R package
The jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGS - Published in JOSS (2021)
medrxivr
medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R - Published in JOSS (2020)
prisonbrief
prisonbrief: An R package that returns tidy data from the World Prison Brief website - Published in JOSS (2018)
covidregionaldata
covidregionaldata: Subnational data for COVID-19 epidemiology - Published in JOSS (2021)
bikedata
bikedata - Published in JOSS (2017)
visxhclust
visxhclust: An R Shiny package for visual exploration of hierarchical clustering - Published in JOSS (2022)
FIPS
FIPS: An R Package for Biomathematical Modelling of Human Fatigue Related Impairment - Published in JOSS (2020)
PostcodesioR
PostcodesioR: An R package for UK geocoding - Published in JOSS (2023)
getTBinR
getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data - Published in JOSS (2019)
The stantargets R package
The stantargets R package: a workflow framework for efficient reproducible Stan-powered Bayesian data analysis pipelines - Published in JOSS (2021)
microViz
microViz: an R package for microbiome data visualization and statistics - Published in JOSS (2021)
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports - Published in JOSS (2018)
fellingdater
fellingdater: a toolkit to estimate, report and combine felling dates derived from historical tree-ring series - Published in JOSS (2024)
KLRfome - Kernel Logistic Regression on Focal Mean Embeddings
KLRfome - Kernel Logistic Regression on Focal Mean Embeddings - Published in JOSS (2019)
epinow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
collapse
Advanced and Fast Data Transformation in R
spanishoddata
Access national high-quality and open-access datasets on movement patterns derived from mobile telephone datasets / Accede y usa datos nacionales abiertos sobre movimientos basados en teléfonos móviles.
gigs
gigs: A package for standardising fetal, neonatal, and child growth assessment - Published in JOSS (2025)
lextale
The LexTALE-package calculates the % correctAv score for the LexTALE-test, English, German and Dutch versions.
RefManageR
RefManageR: Import and Manage BibTeX and BibLaTeX References in R - Published in JOSS (2017)
FedData
Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
MicrobiotaProcess
:microbe: A comprehensive R package for deep mining microbiome
dataRetrieval
This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services.