GitHub
eggshell_review
Contains the dataset, phylogenetic tree, and R code related to analyses for the eggshell review project, as published in Legendre et al. (2022, Journal of Anatomy).
scotomasimulator
Unity C# and GLSL code to simulate customizable macular degeneration scotomas for each eye in a VR application. The scotomas' position can be updated with real-time gaze coordinates from an eye tracker to allow the scotomas to move with eye movements.
msb1015_assignment2
Repository to keep track of the progress of Msc Systems Biology - MSB1015 2019 Assignment 2
Menu_Tracker
MenuTracker is a database that contains nutritional information of menu items served by large out-of-home chains in the UK. Large chain restaurants are defined as those with over 250 employees that provide nutritional information on their websites. The codebase of MenuTracker is written in Python, predominantly using Scrapy framework.
pdtmpl
A light weight pre-processor for Pandoc. Target use case is JSON object documents rendered via Pandoc templates.
domination
Compute the domination number of graphs. Also contains other methods created for the article "J. Renders, S. Tokunaga, C.T. Zamfirescu: Dominating maximal outerplane graphs, manuscript"
swiftgalaxy
Load in particles of a simulated galaxy, rotate coordinates, easy spherical/cylindrical coordinates, access integrated properties, and more.
lonelyedges
Program for finding the lonely edges of a graph. Created for the article: "J. Goedgebeur, D. Mattiolo, G. Mazzuoccolo, J. Renders, I. H. Wolf. Non-double covered cubic graphs, manuscript."
e3sm
Energy Exascale Earth System Model source code. NOTE: use "maint" branches for your work. Head of master is not validated.
gensync
A new framework for benchmarking and optimizing reconciliation of data.
https://github.com/gsolersanz/radboud_projects
Some of the projects I did during my exchange stay in Nijmegen, Netherlands. Studying subjects of the master in Data Science at the prestigious Radboud University.
waterbody-detection-via-deep-learning
Source code for the paper, "Water Body Extraction from Sentinel-2 Imagery with Deep Convolutional Networks and Pixelwise Category Transplantation".
allocator-openmp
Design of multi-threaded memory allocator for supporting the implementation of dynamic graphs.
rak-lowmem-communities-openmp
Design of memory-efficient OpenMP-based Parallel Label Propagation Algorithm (LPA), aka RAK, for community detection.
r-pipeline-development-workshop
Workshop on pipeline development and model deployment onto Kubernetes via Docker using R.
rak-communities-openmp
Design of OpenMP-based Parallel Label Propagation Algorithm (LPA), aka RAK, for community detection.
rak-communities
Single-threaded CPU-based Raghavan Albert Kumara (RAK) algorithm, aka Label propagation Algorithm (LPA), for community detection.
pagerank-barrierfrees-openmp-dynamic
Design of OpenMP-based statically scheduled Barrier-free Dynamic PageRank algorithm for link analysis.
copra-communities
Single-threaded CPU-based Community OVerlap PRopagation Algorithm (COPRA) for community detection.
anthrodisturbance_generator
This is a module to generate anthropogenic disturbances. It's primarily intended for the Northwest Territories region (default), but the structure is universal. All needed to do is provide the metadata information required by the disturbanceParameters object and the disturbanceList containing current disturbances and potential disturbances (i.e., for disturbances of Generating type, explained below).
ug_finalyearproject
Jadavpur University B.E. E.T.C.E. Final Year Project repository
helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
an-empirical-study-of-algebraic-algorithms-in-perfect-matching
Julia implementations of algebraic algorithms in perfect matching
lwt-website
source code for UBCRCC website created using the lab website template
lja_python_for_librarians
Instructional material for Library Juice Academy Python For Librarians
giraffe-identification-ai-tool
AI-Driven Vision Tool for Identifying Individual Giraffes
fair-python-cookiecutter-demo
Live demo to demonstrate a repository created from the fair-python-cookiecutter template.
rna-ligand-based
Evaluation of ligand based methods applied to RNA and DNA targets
evdmeshlib
The code that accompanies the research article in Neurosurgical Focus https://doi.org/10.3171/2025.4.FOCUS25163
nsd2_req_subunit
Code for Paper : NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis
ivb-replication
Replication code for the IVB model with Hierarchical Perceptive Memory and Adaptive Conditional Path
argmining20-social-bias-argumentation
Code for the paper "Argument from Old Man’s View: Assessing Social Bias in Argumentation".
automated-california-av-dataset
AV Collision report dataset from California DMV
classiq-library
The Classiq Library is the largest collection of quantum algorithms and applications. It is the best way to explore quantum computing software. We welcome community contributions to our Library 🙌
bachelor_thesis_project
System for Training-based Expansion of Tools for Proper Name Mentions Recognition Based on Active Learning
forex-trading-automation-with-deep-reinforcement-learning
Forex Trading Automation with PPO, ACKTR, DDPG, TD3 and Ensemble Strategy
thruster_optimization
Code for the optimization of cusped field thruster designs
madrigalweb
madrigalWeb is a pure python module to access data from any Madrigal database
https://github.com/danieldoehring/slides
Collection of Slides of Presentations and Talks I gave
https://github.com/danieldoehring/paper-2025-perrk
Reproducibility Repository for the paper "Paired Explicit Relaxation Runge-Kutta Methods: Entropy Conservative/Stable High-Order Optimized Multirate Time Integration"
