vite • Science 67%

mesa • Science 54%

fedora • Science 54%

Qompass AI On Fedora

@stdlib/constants-time-seconds-in-hour • Science 44%

Number of seconds in an hour.

inzight • Science 44%

iNZight GUI package using reference classes

mlnanoshaperrunner.jl • Science 44%

diffusionlab • Science 44%

Single-molecule trajectory analysis

gromacs-osc • Science 54%

Modifications to GROMACS 2021.5 to perform MD simulations in the presence of Ultrasounds

my_cv • Science 44%

tailwind • Science 54%

complex-contagion-model • Science 57%

Repository used for my Master Thesis at Potsdam Institute for Climate Impact Research, 2024/25.

https://github.com/emptymalei/torchdyn • Science 10%

A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods

cnpypp • Science 57%

2021-12-15-oomza-online • Science 44%

ai-adaptive-fuzzer • Science 44%

mlpro-test-center • Science 75%

MLPro Test Center – Howtos and benchmarking tools for MLPro components and algorithms

SurvivalBase • Science 44%

sandbox_apearcy • Science 44%

Sandbox for walkthrough

sandbox_rthompson1 • Science 44%

contour • Science 44%

mosquitosimcity_4cast • Science 44%

Code associated with the journal article "Mechanistic Modeling of Aedes aegypti Mosquito Habitats for Climate-informed Dengue Forecasting—Can We Improve Lead Time While Retaining Predictive Skill?"

mri_seq2seq • Science 67%

Synthesis Models for Multi-Sequence MRIs

ecophysiology-of-two-mesophotic-octocorals-code-and-data • Science 44%

Publicly available code utilized in analyses for manuscript 'Ecophysiology of two mesophotic octocorals intended for restoration: Effects of light and temperature' (Lange et al, in review)

network_modeling • Science 44%

This project is my personal space to document learnings in complex systems. It's like a treasure chest filled with insights from online seminars and academic papers I've engaged with. 🎓

lujan_etal_2023_ua_osmose • Science 67%

Complete set of scripts used for the UA in NHCE OSMOSE model

cadquery-custom • Science 67%

yolov5-ascend • Science 44%

yolov5的Ascend适配

python-socialsci • Science 44%

shell-novice-es • Science 54%

detrex_python • Science 54%

@stdlib/napi-argv-strided-int8array • Science 44%

Convert a Node-API value representing a strided array to a signed 8-bit integer array.

dstructs • Science 44%

Data structures.

ss_mgag • Science 44%

gcs-shape • Science 52%

gcs is a Python library for creating generalized cylindrical shells (GCS).

graph-openmp • Science 54%

Design of high-performance parallel Graph interface supporting efficient Dynamic batch updates.

restframework-rdf • Science 67%

Integration between RDF and django rest framework

xtant-3_coupling_data • Science 67%

Two-temperature model (TTM) parameters (G, Ce, K) calculated with XTANT-3

bevfusion_distillation • Science 44%

martenlienen_torchode • Science 44%

math-base-special-nanminf • Science 44%

Return the minimum value of two single-precision floating-point numbers, ignoring NaN.

precisecaller • Science 44%

A complete, scalable, easy-to-use, open-source platform for genomic variant detection in Oncology and Precision Medicine

brandt-chat-app • Science 44%

internal chat bot using hybrid search

gmgpolar • Science 67%

High Order Geometric Multigrid for planes in curvilinear coordinates

hci-unity-project • Science 44%

nf-core-rsvseq • Science 44%

https://github.com/compiler-campusminden/cb-vorlesung-bachelor-w25 • Science 44%

Lecture "Compilerbau" (B.Sc.) (Winter 2025/26)

swiftgravgpu_nvidiahack • Science 44%

trl • Science 44%

Train transformer language models with reinforcement learning.

meddecide • Science 67%

Functions for Medical Decision Making for ClinicoPath jamovi Module

https://github.com/evamart/node-api • Science 26%

code_spc_ecog_stn_speech • Science 57%

Sample code for: Spike-phase coupling of subthalamic neurons to posterior opercular cortex predicts speech sound accuracy

rnaseq • Science 44%

whilezie • Science 44%

warduino • Science 57%

📟 A dynamic WebAssembly VM for embedded systems

self-supervised-learning-for-medical-image-analysis • Science 54%

Code for "Evaluating Self-Supervised Learning in Medical Imaging: A Benchmark for Robustness, Generalizability, and Multi-Domain Impact". BMVC, 2025.

gaunegf • Science 67%

Non-Equilibrium Green's Functions (NEGF) extension for the Gaussian software package using the gauopen Python interface

guessing-game-go • Science 44%

A simple guessing game written in Go.

yolov8-highwaycracks • Science 54%

highwaycracks

resume • Science 44%

My Resume Files & Resume

lr_somatic • Science 57%

Workflow for somatic variant calling of long read data

zytron-optimism • Science 44%

ccviR — Peer-reviewed • Science 98%

ccviR: an R package and Shiny app to implement the NatureServe Climate Change Vulnerability Index - Published in JOSS (2024)

plasticparcels — Peer-reviewed • Science 93%

plasticparcels: A python package for marine plastic dispersal simulations and parameterisation development using parcels - Published in JOSS (2024)

GEOS — Peer-reviewed • Science 95%

GEOS: A performance portable multi-physics simulation framework for subsurface applications - Published in JOSS (2024)

MicroFloatingPoints.jl — Peer-reviewed • Science 54%

MicroFloatingPoints.jl: providing very small IEEE 754-compliant floating-point types - Published in JOSS (2024)

QUPS — Peer-reviewed • Science 100%

QUPS: A MATLAB Toolbox for Rapid Prototyping of Ultrasound Beamforming and Imaging Techniques - Published in JOSS (2024)

dsmmR — Peer-reviewed • Science 93%

dsmmR: Estimation and Simulation of Drifting Semi-Markov Models - Published in JOSS (2024)

Fortuna.jl — Peer-reviewed • Science 100%

Fortuna.jl: Structural and System Reliability Analysis in Julia - Published in JOSS (2024)

mathlib — Peer-reviewed • Science 93%

mathlib: A Scala package for readable, verifiable and sustainable simulations of formal theory - Published in JOSS (2024)

Reggae — Peer-reviewed • Science 49%

Reggae: A Parametric Tuner for PBJam, and a Visualization Tool for Red Giant Oscillation Spectra - Published in JOSS (2024)

BiGGer — Peer-reviewed • Science 100%

BiGGer: A Model Transformation Tool written in Java for Bigraph Rewriting in GrGen.NET - Published in JOSS (2024)

MousebreedeR — Peer-reviewed • Science 93%

MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms - Published in JOSS (2024)

SpiDy.jl — Peer-reviewed • Science 93%

SpiDy.jl: open-source Julia package for the study of non-Markovian stochastic dynamics - Published in JOSS (2024)

Anime — Peer-reviewed • Science 93%

Anime: Atmospheric and Instrument Models in the Measurement Equation - Published in JOSS (2024)

agweather-qaqc — Peer-reviewed • Science 100%

agweather-qaqc: An Interactive Python Package for Quality Assurance and Quality Control of Daily Agricultural Weather Data and Calculation of Reference Evapotranspiration - Published in JOSS (2024)

GIRFReco.jl — Peer-reviewed • Science 100%

GIRFReco.jl: An Open-Source Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia - Published in JOSS (2024)

https://github.com/jbrea/tabularreinforcementlearning.jl • Science 13%

goFlux — Peer-reviewed • Science 95%

goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience - Published in JOSS (2024)

https://github.com/lynn-miller/lfmc_from_modis • Science 13%

Live fuel moisture content estimation from MODIS: a deep learning approach

https://github.com/jbrea/rememberingthewhen.jl • Science 26%

MicroTracker.jl — Peer-reviewed • Science 98%

MicroTracker.jl: A Julia package for microbot research - Published in JOSS (2024)

https://github.com/jbrea/jbrea.github.io • Science 13%

NOMAD — Peer-reviewed • Science 49%

NOMAD: A distributed web-based platform for managing materials science research data - Published in JOSS (2023)

RelativisticDynamics.jl — Peer-reviewed • Science 93%

RelativisticDynamics.jl: Relativistic Spin-Orbital Dynamics in Julia - Published in JOSS (2023)

brains-py, A framework to support research on energy-efficient unconventional hardware for machine learning — Peer-reviewed • Science 93%

brains-py, A framework to support research on energy-efficient unconventional hardware for machine learning - Published in JOSS (2023)

guitools • Science 44%

Generates taxonomic abundance from bracken report file

https://github.com/jbrea/spikingequilibriumprop • Science 13%

PyBullet Industrial — Peer-reviewed • Science 100%

PyBullet Industrial: A process-aware robot simulation - Published in JOSS (2023)

https://github.com/jbrea/bayesoptbuilder.jl • Science 13%

https://github.com/jbrea/planningvscompensatorycaching.jl • Science 23%

MultilayerGraphs.jl — Peer-reviewed • Science 98%

MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)

wvu_sure_r_06_08_23 • Science 54%

cosy-draft • Science 44%

dynamically-gated-similarities • Science 67%

Code for Thesis: "Multi-Person Pose Tracking using Dynamically Gated Similarities"

yolov5 • Science 54%

rwandan-flowsheet-digitizer • Science 44%

Digitizes an intraoperative flowsheet from the university teaching hospital in Kigali, Rwanda.

socal-warehouse • Science 44%

This repository contains codes used to perform data cleaning, analysis, and figure production for the Southern California Warehouse Project 2000-2019

ohif • Science 57%

qq-hahnecho • Science 54%

Analysis of Conformational Exchange Processes using Methyl-TROSY-Based Hahn Echo Measurements of Quadruple-Quantum Relaxation

interoperablelca-rem • Science 57%

Scripts and own generated data developed for the article: Miranda Xicotencatl, B., Kleijn, R., van Nielen, S., Donati, F., Sprecher B. & Tukker, A. (2023). Data implementation matters: Effect of software choice and LCI database evolution on a comparative LCA study of permanent magnets.