GitHub
pycontrails
Python library for modeling contrails and other aviation climate impacts
namematch
Tool for probabilistically linking the records of individual entities (e.g. people) within and across datasets
typetaxonscript
Build a resilient biotaxonomic database through collaborative efforts, ensuring endurance and minimizing redundancy
revol-e-tion
Site level energy system optimization model toolbox for investigations of EV fleet integration and management strategies
cnvpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
MODIStsp
An "R" package for automatic download and preprocessing of MODIS Land Products Time Series
parshift
Python package based on Gibson's framework (2003) for turn-taking in group conversation analysis.
@stdlib/stats-base-dnanvariancech
Calculate the variance of a double-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.
cfDNAPro
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
https://github.com/bluebrain/nmodl
Code Generation Framework For NEURON MODeling Language
joulehunter
Joulehunter helps you find what part of your code is consuming considerable amounts of energy.
https://github.com/qiskit-community/prototype-entanglement-forging
A module for simulating chemical and physical systems using a Variational Quantum Eigensolver (VQE) enhanced by Entanglement Forging.
tensor-theorem-prover
First-order logic theorem prover supporting unification with approximate vector similarity
pycomplexheatmap
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
cambrian
Cambrian-1 is a family of multimodal LLMs with a vision-centric design.
DimensionalPlotRecipes
High dimensional numbers and reductions recipes for data visualization of scientific machine learning (SciML)
rcompadre
R tools for obtaining and manupulating data from the COMPADRE and COMADRE Plant and Animal Matrix Databases
metasklearn
MetaSklearn: A Metaheuristic-Powered Hyperparameter Optimization Framework for Scikit-Learn Models.
Pybotics
Pybotics: Python Toolbox for Robotics - Published in JOSS (2019)
anylabeling
Effortless AI-assisted data labeling with AI support from YOLO, Segment Anything (SAM+SAM2), MobileSAM!!
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
FEniCS
A scientific machine learning (SciML) wrapper for the FEniCS Finite Element library in the Julia programming language
deeplc
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
https://github.com/cbg-ethz/scatrex
Map single-cell transcriptomes to copy number evolutionary trees.
gwkokab
An open-source JAX-based gravitational-wave population inference toolkit for parametric models
basic-memory
AI conversations that actually remember. Never re-explain your project to Claude again. Local-first, integrates with Obsidian. Join our Discord: https://discord.gg/tyvKNccgqN
scikit-surgeryvtk
image fusion or overlay, for augmented reality apps, using VTK and OpenCV for a calibrated overlay.
https://github.com/asfhyp3/mkdocs-asf-theme
An extension of the MkDocs Material Theme for ASF
@stdlib/blas-ext-base-dnansumkbn
Calculate the sum of double-precision floating-point strided array elements, ignoring NaN values and using an improved Kahan–Babuška algorithm.
fiss_planner
[RA-L 2022] FISS: A Trajectory Planning Framework using Fast Iterative Search and Sampling Strategy for Autonomous Driving
famix
An abstract representation of source code. Famix is generic and can describe applications in multiple programming languages.
MHKiT-Python
MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.
SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
GSAreport
GSAreport: Easy to Use Global Sensitivity Reporting - Published in JOSS (2022)
https://github.com/compas-dev/compas_xr
COMPAS XR streamlines extended reality workflows to ease the implementation of human-machine collaborative applications in architectural research and educational environments.
dfm-tools
A Python package for pre- and postprocessing D-Flow FM model input and output files
metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
https://github.com/cafferychen777/ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
https://github.com/allenai/allenact
An open source framework for research in Embodied-AI from AI2.
ev-ecosim
EV-EcoSim: A grid-aware co-simulation platform for the design and optimization of EV Charging Infrastructure. Link to publication: https://doi.org/10.1109/TSG.2023.3339374
nadir
Nadir: Cutting-edge PyTorch optimizers for simplicity & composability! 🔥🚀💻
alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
STEDY
STEDY: Software for TEnsegrity DYnamics - Published in JOSS (2019)
mvgam
{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting
zowie
Adds Zotero "select" links to attachment files in a Zotero database on macOS, so that outside of Zotero, you can find the bibliographic entry to which a file belongs. (Only works for local storage, not linked attachments.)
https://github.com/cda-tum/mmft-simulator
A library that contains a collection of simulators for closed channel-based microfluidic devices.
nmr_fair-dos
This tool extracts metadata regarding NMR data from multiple repositories and creates FAIR-DOs for them.
self-hosted-datamanagement
Lehrmaterialien zum Kurs "Die eigene Nextcloud mit dem Raspberry Pi: Self-hosted Data Management"
