GitHub
capheine
Automated evolutionary annotation of existing datasets using Nextflow
shortlink-ui-kit
Shortlink service (Microservice example) ⭐️ Star the repo if you like it!
coffea
Basic tools and wrappers for enabling not-too-alien syntax when running columnar Collider HEP analysis.
torch-spatiotemporal
tsl: a PyTorch library for processing spatiotemporal data.
bom_analysis
A framework for performing analysis based on a Bill of Materials (BOM) structure. Creates data storage structure that follows a hierarchical BOM which can be operated on. Developed for STEP Outboard Blankets.
exoplex
DEPRECATED. Please refer to https://github.com/CaymanUnterborn/ExoPlex for the updated project. A self-consistent mineral physics solver for exoplanets.
sifrc
Python implementation of the Fourier Ring Correlation (FRC) to determine image resolution
irl-maxent
Maximum Entropy and Maximum Causal Entropy Inverse Reinforcement Learning Implementation in Python
samap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
cost-of-capital-calculator
A cost of capital and effective tax rate calculator
qcd
Quantum Circuit Designer: A gymnasium-based set of environments for benchmarking reinforcement learning for quantum circuit design.
audioset-convnext-inf
Adapting a ConvNeXt model to audio classification on AudioSet
calcam
Python package of spatial calibration tools for science & engineering camera systems.
rdflib-endpoint
💫 Deploy SPARQL endpoints from RDFLib Graphs to serve RDF files, machine learning models, or any other logic implemented in Python
corrupted-text
A python library to generate out-of-distribution text datasets. Specifically, the library applies model-independent, commonplace corruptions (not model-specific, worst-case adversarial corruptions). We thus aim to allow benchmark-studies regarding robustness against realistic outliers.
https://github.com/alleninstitute/all-active-workflow
Creating the code base for All-active Model generation written on top of Bluepyopt
https://github.com/broadinstitute/celligner_ms
Code related to the Celligner manuscript
ragtag
Tools for fast and flexible genome assembly scaffolding and improvement
aeolus-ocean
An all-weather, day-and-night, collision avoidance simulator that can be implemented as a digital twin for the autonomous COLREG-compliant navigation of maritime vessels.
educarencomunidad.tech
Versión en español de Enseñar Tecnología en Comunidad (Teaching Tech Together)
rho-diffusion
Parameterizing n-dimensional density fields using denoising diffusion probabilistic models
pymsaviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - Published in JOSS (2016)
openqa-eval
ACL 2023: Evaluating Open-Domain Question Answering in the Era of Large Language Models
gym-marl-reconnaissance
Gym environment for cooperative multi-agent reinforcement learning in heterogeneous robot teams
ee-cptcity
ee-cptcity is a module for Google Earth Engine where you can find multiple colour palettes of different themes related to cartography, technical illustration and design. Currently ee-cptcity module has more 300 of color palettes available for the users.
octave-tutorial
Octave programming tutorial based on SW carpentry's Programming with MATLAB
apertium-fin-eng
Apertium bilingual lexical data for Finnish–English machine translation
turn_by_turn
I/O functionality for turn-by-turn BPM measurements data from different particle accelerators
https://github.com/drorlab/pensa
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
knowgo-vehicle-simulator
An interactive multi-platform Connected Car simulator for generating and streaming realistic vehicle telemetry.
ml-keyframer
Keyframer: Empowering Animation Design Using Large Language Models
yeast-in-microstructures-dataset
Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
r-genomics-in-development
Development repo for a revamp of the Data Carpentry R genomics lessons
pyempatica
Python wrapper for Empatica TCP client, allowing bidirectional communication with an Empatica E4.
https://github.com/biocomputingup/cafa-evaluator
A Python Tool for Benchmarking Ontological Classification Methods
learnenvirodiy
A tutorial for learning how to program an Arduino-framework micro-controller to become an environmental data logger.
https://github.com/astropy/astropy-v2.0-paper
Repository for the second Astropy paper
stats-base-snanvariancech
Calculate the variance of a single-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.