Pippin — Peer-reviewed • Rank 5.6 • Science 67%

Pippin: A pipeline for supernova cosmology - Published in JOSS (2020)

pyplr • Rank 8.6 • Science 64%

Pupillometry software for EPSRC CVD

chaospy • Rank 18.6 • Science 54%

Chaospy - Toolbox for performing uncertainty quantification.

tum_esm_utils • Rank 7.6 • Science 65%

Python utilities for our research group and beyond

carculator • Rank 5.6 • Science 67%

Prospective environmental and economic life cycle assessment of vehicles made blazing fast.

Lexedata — Peer-reviewed • Rank 5.6 • Science 67%

Lexedata: A toolbox to edit CLDF lexical datasets - Published in JOSS (2022)

pynmeagps • Rank 18.6 • Science 54%

Python library for parsing and generating NMEA 0183 GNSS/GPS protocol messages.

privacy-meter • Rank 13.6 • Science 59%

Privacy Meter: An open-source library to audit data privacy in statistical and machine learning algorithms.

https://github.com/afeinstein20/eleanor • Rank 13.6 • Science 59%

A tool for light curve extraction from the TESS FFIs.

https://github.com/aiidateam/aiida-wannier90-workflows • Rank 13.6 • Science 59%

A collection of advanced automated workflows to compute Wannier functions using AiiDA and the Wannier90 code

mcmicro • Rank 5.6 • Science 67%

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

marlin • Rank 5.6 • Science 67%

[CVPR] MARLIN: Masked Autoencoder for facial video Representation LearnINg

datasketch • Rank 26.6 • Science 46%

MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble and HNSW

polygnn • Rank 5.6 • Science 67%

PolyGNN: Polyhedron-based graph neural network for 3D building reconstruction from point clouds [ISPRS 2024]

heat-desalination • Rank 5.6 • Science 67%

Simulation and optimisation of hybrid electric and thermal powered desalination systems

playground • Rank 18.6 • Science 54%

An open-source library for GPU-accelerated robot learning and sim-to-real transfer.

uavsar-pytools • Rank 8.6 • Science 64%

Python tools to download, convert, and visualize UAVSAR images.

gamma • Rank 13.5 • Science 59%

Dose Rate Estimation from In-Situ Gamma-Ray Spectrometry Measurements

qspool • Rank 5.5 • Science 67%

Dependency-free solution to spool jobs into SLURM scheduler without exceeding queue capacity limits

masci-tools • Rank 13.5 • Science 59%

Post-processing toolkit for electronic structure calculations

@iomeg/zenodo-upload • Rank 5.5 • Science 67%

JS package to create a new version of a Zenodo upload with a file

MBNMAdose • Rank 13.5 • Science 59%

R package for dose-response MBNMA

access-nri-intake • Rank 13.5 • Science 59%

Tools and configuration info used to manage ACCESS-NRI's intake catalogue

conodictor • Rank 5.5 • Science 67%

ConoDictor predicts conopeptides superfamily using generalized profiles and hidden Markov models.

skbel • Rank 8.5 • Science 64%

SKBEL - Bayesian Evidential Learning framework built on top of scikit-learn.

easyunfold — Peer-reviewed • Rank 13.5 • Science 59%

easyunfold: A Python package for unfolding electronic band structures - Published in JOSS (2024)

gappa • Rank 5.5 • Science 67%

A toolkit for analyzing and visualizing phylogenetic placement data

gmkriger • Rank 5.5 • Science 67%

A Kriging-based ground motion intensity measure calculator.

lexikanon • Rank 5.5 • Science 67%

A HyFI plugin for Tokenizers

sasta • Rank 5.5 • Science 67%

Annotates speech transcripts and scores them using diagnostic metrics

@stdlib/stats-incr-skewness • Rank 5.5 • Science 67%

Compute a corrected sample skewness incrementally.

decimer-segmentation • Rank 13.5 • Science 59%

Chemical structure detection and segmentation tool for Journal articles.

cutradenet • Rank 5.5 • Science 67%

Module for GPU-Accelerated Kinetic Wealth Exchange Models on Complex Networks

https://github.com/unit8co/darts • Rank 26.5 • Science 46%

A python library for user-friendly forecasting and anomaly detection on time series.

unofficial-loongarch-intrinsics-guide • Rank 5.5 • Science 67%

Unofficial LoongArch Intrinsics Guide

@stdlib/ml-incr-kmeans • Rank 5.5 • Science 67%

Incrementally partition data into `k` clusters.

https://github.com/alleninstitute/scrattch • Rank 5.5 • Science 67%

Single cell RNA-seq analysis for transcriptomic type characterization

https://github.com/alan-turing-institute/distinctipy • Rank 18.4 • Science 54%

A lightweight package for generating visually distinct colours.

CoastSat • Rank 13.4 • Science 59%

Global shoreline mapping tool from satellite imagery

areal — Peer-reviewed • Rank 13.4 • Science 59%

areal: An R package for areal weighted interpolation - Published in JOSS (2019)

volk • Rank 13.4 • Science 59%

The Vector Optimized Library of Kernels

noisepy-seis • Rank 13.4 • Science 59%

Ambient-Noise Seismology Package

circdna • Rank 5.4 • Science 67%

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

topostats • Rank 13.4 • Science 59%

An AFM image analysis program to batch process data and obtain statistics from images

velocityconversion • Rank 5.4 • Science 67%

Python implementation of mantle velocity conversion by Goes et al. (2000).

pystrometry • Rank 8.4 • Science 64%

Package to support the analysis of high-precision astrometry timeseries, in particular the determination of Keplerian orbits.

StochasticDiffEq • Rank 18.4 • Science 54%

Solvers for stochastic differential equations which connect with the scientific machine learning (SciML) ecosystem

lightr — Peer-reviewed • Rank 13.4 • Science 59%

lightr: import spectral data and metadata in R - Published in JOSS (2019)

auspice • Rank 18.4 • Science 54%

Web app for visualizing pathogen evolution

https://github.com/quakemigrate/quakemigrate • Rank 13.4 • Science 59%

A Python package for automatic earthquake detection and location using waveform migration and stacking.

obsidian-quadro • Rank 5.3 • Science 67%

Obsidian Plugin for social-scientific Qualitative Data Analysis (QDA). An open alternative to MAXQDA and atlas.ti, using Markdown to store data and research codes.

ltntorch • Rank 5.3 • Science 67%

PyTorch implementation of Logic Tensor Networks, a Neural-Symbolic framework.

omicspls • Rank 5.3 • Science 67%

R package for High dimensional data analysis and integration with O2PLS!

lagtraj • Rank 8.3 • Science 64%

Python trajectory code for Lagrangian simulations

pylabrobot • Rank 13.3 • Science 59%

interactive & hardware agnostic SDK for lab automation

uno • Rank 8.3 • Science 64%

A next-gen SQP & barrier solver for nonlinearly constrained optimization

infra • Rank 5.3 • Science 67%

Instructions for system administrators to deploy the eWaterCycle platform

pdfplumber • Rank 28.3 • Science 44%

Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.

python-aos-lesson • Rank 8.3 • Science 64%

Python for Atmosphere and Ocean Scientists

musicmanipulations.jl • Rank 8.3 • Science 64%

Manipulate music data, humanize, quantize and analyze music performances with Julia

optical-beams-meep • Rank 5.3 • Science 67%

Simulation of reflection and refraction of polarized opticial beams at plane and curved dielectric interfaces.

combustion_toolbox • Rank 5.3 • Science 67%

A MATLAB-GUI based open-source tool for solving gaseous combustion problems

dispRity • Rank 13.3 • Science 59%

Measuring disparity with R

sundials • Rank 10.3 • Science 62%

Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcome for bug fixes and minor changes.

ctv • Rank 13.3 • Science 59%

CRAN Task View Initiative

circl • Rank 5.3 • Science 67%

harmonic • Rank 13.3 • Science 59%

Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection

apexpy • Rank 13.3 • Science 59%

A Python wrapper for Apex coordinates

pmartr • Rank 13.3 • Science 59%

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

edibble • Rank 13.3 • Science 59%

An R-package that encapsulate elements of experimental design for better planning, management, and workflow

https://github.com/bytedance/ui-tars-desktop • Rank 26.3 • Science 46%

The Open-Source Multimodal AI Agent Stack: Connecting Cutting-Edge AI Models and Agent Infra

cubo • Rank 5.3 • Science 67%

On-Demand Earth System Data Cubes (ESDCs) in Python

ginga • Rank 18.3 • Science 54%

The Ginga astronomical FITS file viewer

chaste-codegen • Rank 10.3 • Science 62%

Code generation for Chaste based on cellmlmanip

astronify • Rank 10.3 • Science 62%

Astronomical data sonification.

qrcode • Rank 5.3 • Science 67%

QRcode Generator for R

rayleigh • Rank 8.2 • Science 64%

Rayleigh: Pseudo-spectral MHD

parafilt • Rank 5.2 • Science 67%

Collection of parallel adaptive filter implementations for efficient signal processing applications in PyTorch.

https://github.com/glue-viz/glue • Rank 13.2 • Science 59%

Linked Data Visualizations Across Multiple Files

@stdlib/stats-incr-maape • Rank 5.2 • Science 67%

Compute the mean arctangent absolute percentage error (MAAPE) incrementally.

imcyto • Rank 5.2 • Science 67%

Image Mass Cytometry analysis pipeline

PyProximal - scalable convex optimization in Python — Peer-reviewed • Rank 13.2 • Science 59%

PyProximal - scalable convex optimization in Python - Published in JOSS (2024)

sigprofilerextractor • Rank 15.2 • Science 57%

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

mmtwfs • Rank 5.2 • Science 67%

Wavefront sensing and active optics management tools for the MMTO

oct2py • Rank 18.2 • Science 54%

Run M Files from Python - GNU Octave to Python bridge

@stdlib/stats-incr-mmaape • Rank 5.2 • Science 67%

Compute a moving arctangent mean absolute percentage error (MAAPE) incrementally.

pattyanalytics • Rank 5.2 • Science 67%

Reusable point cloud analytics software. Includes segmentation, registration, file format conversion.

napari-time-series-plotter • Rank 5.2 • Science 67%

A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.

lidR • Rank 23.2 • Science 49%

Airborne LiDAR data manipulation and visualisation for forestry application

RadonKA • Rank 5.2 • Science 67%

A simple yet sufficiently fast (attenuated) Radon and backproject implementation using KernelAbstractions.jl. Runs on CPU, CUDA, ...

xscen • Rank 13.2 • Science 59%

A climate change scenario-building analysis framework.

opencbdc-tx • Rank 10.2 • Science 62%

A transaction processor for a hypothetical, general-purpose, central bank digital currency

spyndex • Rank 15.2 • Science 57%

Awesome Spectral Indices in Python.

qnetvo • Rank 8.2 • Science 64%

Simulate and optimize quantum communication networks using quantum computers.

pymetis • Rank 8.1 • Science 64%

A Python wrapper around Metis, a graph partitioning package

gdm-concordia • Rank 18.1 • Science 54%

A library for generative social simulation

epinowcast • Rank 8.1 • Science 64%

Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

aacgmv2 • Rank 13.1 • Science 59%

Python library for AACGM-v2 magnetic coordinates

testpipeline • Rank 5.1 • Science 67%

A small example pipeline used to test new nf-core infrastructure and common code.

axom • Rank 10.1 • Science 62%

CS infrastructure components for HPC applications