Parallel-CDM — Peer-reviewed • Science 98%

Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB - Published in JOSS (2025)

ChemInformant — Peer-reviewed • Science 98%

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)

SDA — Peer-reviewed • Science 93%

SDA: a symbolic differential algebra package in C++ - Published in JOSS (2025)

voice — Peer-reviewed • Science 93%

voice: A Comprehensive R Package for Audio Analysis - Published in JOSS (2025)

BayesReconPy — Peer-reviewed • Science 93%

BayesReconPy: A Python package for forecast reconciliation - Published in JOSS (2025)

SOAP — Peer-reviewed • Science 93%

SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations - Published in JOSS (2025)

PolytopeWalk — Peer-reviewed • Science 93%

PolytopeWalk: Sparse MCMC Sampling over Polytopes - Published in JOSS (2025)

The Population Synthesis Toolkit (PST) Python Library — Peer-reviewed • Science 98%

The Population Synthesis Toolkit (PST) Python Library - Published in JOSS (2025)

PyStarshade — Peer-reviewed • Science 93%

PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades - Published in JOSS (2025)

PAAT — Peer-reviewed • Science 93%

PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python - Published in JOSS (2025)

EvoVis — Peer-reviewed • Science 67%

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms - Published in JOSS (2025)

ExcelToShiny — Peer-reviewed • Science 93%

ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates - Published in JOSS (2025)

VectoRose — Peer-reviewed • Science 98%

VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python - Published in JOSS (2025)

bisonpicsuite — Peer-reviewed • Science 93%

bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. - Published in JOSS (2025)

gaia — Peer-reviewed • Science 100%

gaia: An R package to estimate crop yield responses to temperature and precipitation - Published in JOSS (2025)

Lighter — Peer-reviewed • Science 93%

Lighter: Configuration-Driven Deep Learning - Published in JOSS (2025)

3DQLayers — Peer-reviewed • Science 98%

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)

TurboFlow — Peer-reviewed • Science 93%

TurboFlow: Meanline Modelling of Axial Turbines - Published in JOSS (2025)

PointClouds.jl — Peer-reviewed • Science 96%

PointClouds.jl: Fast & flexible processing of lidar data - Published in JOSS (2025)

dpest — Peer-reviewed • Science 98%

dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration - Published in JOSS (2025)

MEDUSA — Peer-reviewed • Science 93%

MEDUSA: An R tool to model equity and distributional impacts - Published in JOSS (2025)

AutoUncertainties — Peer-reviewed • Science 93%

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

Solar Data Tools — Peer-reviewed • Science 96%

Solar Data Tools: a Python library for automated analysis of unlabeled PV data - Published in JOSS (2025)

medRCT — Peer-reviewed • Science 93%

medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R - Published in JOSS (2025)

Syclops — Peer-reviewed • Science 96%

Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data - Published in JOSS (2025)

RiverFlowDynamics v1.0 — Peer-reviewed • Science 92%

RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics - Published in JOSS (2025)

Mozzie — Peer-reviewed • Science 98%

Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes - Published in JOSS (2025)

REMORA — Peer-reviewed • Science 93%

REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX) - Published in JOSS (2025)

ICAT — Peer-reviewed • Science 96%

ICAT: The Interactive Corpus Analysis Tool - Published in JOSS (2025)

Giga Connectome — Peer-reviewed • Science 98%

Giga Connectome: a BIDS-app for time series and functional connectome extraction - Published in JOSS (2025)

AI-ANNE — Peer-reviewed • Science 93%

AI-ANNE: (A) (N)eural (N)et for (E)xploration - Published in JOSS (2025)

<code>diverse-seq</code> — Peer-reviewed • Science 93%

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences - Published in JOSS (2025)

elfe3D v1.0.1 — Peer-reviewed • Science 93%

elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D - Published in JOSS (2025)

AquaCrop.jl — Peer-reviewed • Science 93%

AquaCrop.jl: A Process-Based Model of Crop Growth - Published in JOSS (2025)

SAnTex — Peer-reviewed • Science 93%

SAnTex: A Python-based Library for Seismic Anisotropy Calculation - Published in JOSS (2025)

MDPSolver — Peer-reviewed • Science 93%

MDPSolver: An Efficient Solver for Markov Decision Processes - Published in JOSS (2025)

EKF_CAL — Peer-reviewed • Science 98%

EKF_CAL: Extended Kalman Filter-based Calibration and Localization - Published in JOSS (2025)

corrp — Peer-reviewed • Science 93%

corrp: An R package for multiple correlation-like analysis and clustering in mixed data - Published in JOSS (2025)

popclass — Peer-reviewed • Science 100%

popclass: A Python Package for Classifying Microlensing Events - Published in JOSS (2025)

remotePARTS — Peer-reviewed • Science 93%

remotePARTS: Spatiotemporal autoregression analyses for large data sets - Published in JOSS (2025)

target-methylseq-qc — Peer-reviewed • Science 98%

target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files. - Published in JOSS (2025)

CUDA-METRO — Peer-reviewed • Science 93%

CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation - Published in JOSS (2025)

ez-zarr — Peer-reviewed • Science 98%

ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets - Published in JOSS (2025)

pooledpeaks — Peer-reviewed • Science 93%

pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples - Published in JOSS (2025)

ParquetDB — Peer-reviewed • Science 93%

ParquetDB: A Lightweight Python Parquet-Based Database - Published in JOSS (2025)

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

PathSim - A System Simulation Framework — Peer-reviewed • Science 98%

PathSim - A System Simulation Framework - Published in JOSS (2025)

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks — Peer-reviewed • Science 96%

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks - Published in JOSS (2024)

https://github.com/erictleung/coursework • Science 10%

:notebook: Coursework for miscellaneous programming, web development, etc courses

dummydatarepo • Science 67%

https://github.com/erictleung/freecodecamp-news-analysis • Science 10%

:office: Code and notes on running various database management systems

Biosensor Framework — Peer-reviewed • Science 100%

Biosensor Framework: A C# Library for Affective Computing - Published in JOSS (2021)

IndividualDisplacements.jl — Peer-reviewed • Science 59%

IndividualDisplacements.jl: a Julia package to simulate and study particle displacements within the climate system - Published in JOSS (2021)

https://github.com/erictleung/.github • Science 13%

Eric Leung's GitHub settings

POMDPStressTesting.jl — Peer-reviewed • Science 98%

POMDPStressTesting.jl: Adaptive Stress Testing for Black-Box Systems - Published in JOSS (2021)

RivGraph — Peer-reviewed • Science 59%

RivGraph: Automatic extraction and analysis of river and delta channel network topology - Published in JOSS (2021)

MiTfAT — Peer-reviewed • Science 100%

MiTfAT: A Python-based Analysis Tool for Molecular fMRI Experiments. - Published in JOSS (2021)

3dfier — Peer-reviewed • Science 100%

3dfier: automatic reconstruction of 3D city models - Published in JOSS (2021)

ADI.jl — Peer-reviewed • Science 100%

ADI.jl: A Julia Package for High-Contrast Imaging - Published in JOSS (2020)

Multiscale Solar Water Heating — Peer-reviewed • Science 98%

Multiscale Solar Water Heating - Published in JOSS (2020)

pyveg — Peer-reviewed • Science 98%

pyveg: A Python package for analysing the time evolution of patterned vegetation using Google Earth Engine - Published in JOSS (2020)

ocean_data_tools — Peer-reviewed • Science 95%

ocean_data_tools: A MATLAB toolbox for interacting with bulk freely-available oceanographic data - Published in JOSS (2020)

Peacock.jl — Peer-reviewed • Science 98%

Peacock.jl: Photonic crystals in Julia - Published in JOSS (2020)

https://github.com/erictleung/tables • Science 10%

Convert various delimited text files to LaTeX tables

spider-web-tension-data • Science 67%

pmv-ads-2024-1-e5-proj-empext-t2-fermaloc • Science 44%

pmv-ads-2024-1-e5-proj-fermaloc-t2 created by GitHub Classroom

CPgeneProfiler — Peer-reviewed • Science 95%

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies - Published in JOSS (2020)

emba — Peer-reviewed • Science 93%

emba: R package for analysis and visualization of biomarkers in boolean model ensembles - Published in JOSS (2020)

A parallel global multiobjective framework for optimization — Peer-reviewed • Science 93%

A parallel global multiobjective framework for optimization: pagmo - Published in JOSS (2020)

qMRLab — Peer-reviewed • Science 95%

qMRLab: Quantitative MRI analysis, under one umbrella - Published in JOSS (2020)

CapacityExpansion — Peer-reviewed • Science 95%

CapacityExpansion: A capacity expansion modeling framework in Julia - Published in JOSS (2020)

MTEX2Gmsh — Peer-reviewed • Science 98%

MTEX2Gmsh: a tool for generating 2D meshes from EBSD data - Published in JOSS (2020)

https://github.com/erictleung/talk-unittest-travis-ci • Science 33%

Presentation on Python's unittest and Travis CI

dcgp — Peer-reviewed • Science 95%

dcgp: Differentiable Cartesian Genetic Programming made easy. - Published in JOSS (2020)

https://github.com/erictleung/job-search-visualization • Science 13%

A data visualization of my job search in 2021

COVID-19 Data Hub — Peer-reviewed • Science 95%

COVID-19 Data Hub - Published in JOSS (2020)

FLAM — Peer-reviewed • Science 95%

FLAM: Fast Linear Algebra in MATLAB - Algorithms for Hierarchical Matrices - Published in JOSS (2020)

https://github.com/erictleung/how-to-learn-to-code • Science 13%

https://github.com/erictleung/emacs-lisp-deliberate-practice • Science 13%

Deliberate Practice for Learning Emacs Lisp

https://github.com/erictleung/tidytuesdays • Science 13%

:chart_with_upwards_trend: My attempts at #tidytuesday

rca • Science 44%

The Code for the runtime tests for the Paper "Rescue Craft Allocation in Tidal Waters of the North and Baltic Sea"

pybeach — Peer-reviewed • Science 93%

pybeach: A Python package for extracting the location of dune toes on beach profile transects - Published in JOSS (2019)

https://github.com/erictleung/simplewriter • Science 10%

Vim plugin script to color words that are not simple like in http://xkcd.com/simplewriter/

momepy — Peer-reviewed • Science 98%

momepy: Urban Morphology Measuring Toolkit - Published in JOSS (2019)

PressureDrop.jl — Peer-reviewed • Science 93%

PressureDrop.jl: Pressure traverses and gas lift analysis for oil & gas wells - Published in JOSS (2019)