GitHub
https://github.com/fernphy/ferncal
A database of fossils for molecular dating of the fern tree of life
https://github.com/hazboun6/mdc2
A repository of the IPTA Mock Data Challenge datasets.
https://github.com/fernphy/ftol_ms
Code to generate the manuscript "An open and continuously updated fern tree of life (FTOL)"
https://github.com/feroz1gul/ned-project
streamlit, FastAPI, Kafka, Kong, Containers with Docker file and compose file
https://github.com/ferreiraas/ciencia-com-r-consultoria
Ciência com R é direcionado a pesquisadores e alunos de todos os níveis de graduação e pós-graduação da Área de Saúde.
hefquin
HeFQUIN is a query federation engine for heterogeneous federations of graph data sources, including federations of knowledge graphs.
electricbrainsignals
Notebooks and material for "Electric Brain Signals" written by Geir Halnes, Torbjørn V. Ness, Solveig Næss, Espen Hagen, Klas H. Pettersen and Gaute T. Einevoll, now published by Cambridge University Press.
opensoundscape
Open source, scalable software for the analysis of bioacoustic recordings
screpertoire
This is a read-only mirror of the git repos at https://bioconductor.org
https://github.com/hazboun6/enterprise
ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis.
https://github.com/ferrite-fem/ferriteinterfaceelements.jl
Interface elements (aka cohesive elements) for Ferrite.jl
https://github.com/fertiglab/spatial_venous_invasion_pdac
Spatial profiling of venous invasion in human pancreatic ductal adenocarcinoma
https://github.com/fertiglab/cogaps
Bayesian MCMC matrix factorization algorithm
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
echoflow
A particle filter based target tracker for marine radar, LIDAR and other range-based sensors
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
mgvt
Modular architecture for an AI-based 3D Virtual Teacher (Bachelor's thesis 2025)
https://github.com/924973292/awesome-aerial-ground-object-re-identification
Awesome-AGReID is a curated collection of the latest methods, datasets, and benchmarks for Aerial–Ground Object Re-Identification (AG-ReID). This field focuses on matching objects, mainly people and vehicles, between aerial drone views and ground cameras—an important task for surveillance and security applications.
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
https://github.com/hbeale/epinano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
https://github.com/jcbayley/vitamin_c
This will be the first official public release of the VItamin code base. VItamin is a python package for producing fast gravitational wave posterior samples.
https://github.com/jchiyah/exploring-mm-in-simmc2
Code and models for the paper 'Exploring Multi-Modal Representations for Ambiguity Detection & Coreference Resolution in the SIMMC 2.0 Challenge' published at AAAI 2022 DSTC10 Workshop
https://github.com/hbpmedical/mip-deployment
Deploy the Medical Informatics Platform
https://github.com/hbpmedical/mip_schema
Open-source Python package to manipulate Common Data Elements Metadata Schema for the Medical Informatics Platform (MIP).
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
DifferentialRiccatiEquations
Solvers for autonomous matrix-valued generalized differential Riccati equations (GDREs) with low-rank solutions.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
tcc
Optimizing IoT Cloud Applications for Scalability: Leveraging RPC with Distributed Queues for Seamless Operations