banks • Rank 21.3 • Science 44%

LLM prompt language based on Jinja. Banks provides tools and functions to build prompts text and chat messages from generic blueprints. It allows attaching metadata to prompts to ease their management, and versioning is first-class citizen. Banks provides ways to store prompts on disk along with their metadata.

causalegm • Rank 11.3 • Science 54%

A General Causal Inference Framework by Encoding Generative Modeling

MultiScaleArrays • Rank 11.3 • Science 54%

A framework for developing multi-scale arrays for use in scientific machine learning (SciML) simulations

beeai-framework • Rank 21.3 • Science 44%

Build production-ready AI agents in both Python and Typescript.

pestpp • Rank 8.3 • Science 57%

tools for scalable and non-intrusive parameter estimation, uncertainty analysis and sensitivity analysis

brainglobe-napari-io • Rank 11.3 • Science 54%

Read and write files from the BrainGlobe neuroanatomy suite

ziti • Rank 21.3 • Science 44%

The parent project for OpenZiti. Here you will find the executables for a fully zero trust, application embedded, programmable network @OpenZiti

latrend • Rank 11.3 • Science 54%

An R package for clustering longitudinal datasets in a standardized way, providing interfaces to various R packages for longitudinal clustering, and facilitating the rapid implementation and evaluation of new methods

https://github.com/barahona-research-group/pygenstability • Rank 6.3 • Science 59%

PyGenStability: Multiscale community detection with generalized Markov Stability

lasio • Rank 21.3 • Science 44%

Python library for reading and writing well data using Log ASCII Standard (LAS) files

drasyl • Rank 11.3 • Science 54%

drasyl-java is a high-performance framework for rapid development of distributed applications

https://github.com/modelscope/data-juicer • Rank 19.2 • Science 46%

Data processing for and with foundation models! 🍎 🍋 🌽 ➡️ ➡️🍸 🍹 🍷

nrel-rev • Rank 16.2 • Science 49%

Renewable Energy Potential (reV) Model

DiffEqBayes • Rank 11.2 • Science 54%

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

https://github.com/brentp/vcfanno • Rank 16.2 • Science 49%

annotate a VCF with other VCFs/BEDs/tabixed files

caltechlibrary.github.io • Rank 3.2 • Science 62%

Caltech Library's Digital Library Development sandbox.

DiffEqPhysics • Rank 11.2 • Science 54%

A library for building differential equations arising from physical problems for physics-informed and scientific machine learning (SciML)

animalcules • Rank 16.2 • Science 49%

R shiny app for interactive microbiome analysis

dex-lang • Rank 11.2 • Science 54%

Research language for array processing in the Haskell/ML family

openalexR • Rank 16.2 • Science 49%

Getting bibliographic records from OpenAlex

rcarbon • Rank 16.2 • Science 49%

Methods for calibrating and analysing radiocarbon dates

deerpredict • Rank 8.2 • Science 57%

Software for the prediction of DEER and PRE data from conformational ensembles.

translate-shell • Rank 11.2 • Science 54%

Translate text by google, bing, youdaozhiyun, haici, stardict, openai, large language model of local machine, etc at same time from CLI, GUI (GNU/Linux, Android, macOS and Windows), REPL, python, shell and vim.

ihm • Rank 16.2 • Science 49%

Python package for handling IHM mmCIF and BinaryCIF files

batdetect2 • Rank 6.2 • Science 59%

dggrid4py • Rank 11.2 • Science 54%

A Python 3.8+ wrapper for the DGGS tool DGGRID from Kevin Sahr

Distance • Rank 16.2 • Science 49%

Simple distance sampling analysis

template • Rank 3.2 • Science 62%

Template repository for software projects by the Caltech Library

hash • Rank 11.2 • Science 54%

🚀 The open-source, multi-tenant, self-building knowledge graph

rascal • Rank 11.2 • Science 54%

The implementation of the Rascal meta-programming language (including interpreter, type checker, parser generator, compiler and JVM based run-time system)

deafrica-tools • Rank 16.2 • Science 49%

Repository for Digital Earth Africa Sandbox, including: Jupyter notebooks, scripts, tools and workflows for geospatial analysis with Open Data Cube and xarray

mmpdb • Rank 16.2 • Science 49%

A package to identify matched molecular pairs and use them to predict property changes.

altair-upset • Rank 8.2 • Science 57%

Create interactive UpSet plots using Altair

https://github.com/cdcgov/datasets-sars-cov-2 • Rank 6.1 • Science 59%

Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)

cytools • Rank 11.1 • Science 54%

A software package for analyzing Calabi-Yau manifolds.

RAMClustR • Rank 16.1 • Science 49%

Assigning precursor-product ion relationships in indiscriminant MS/MS data

pyprecag • Rank 11.1 • Science 54%

A suite of tools for Precision Agriculture

deeptime • Rank 16.1 • Science 49%

An R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals

FDboost • Rank 16.1 • Science 49%

Boosting Functional Regression Models. The current release version can be found on CRAN (http://cran.r-project.org/package=FDboost).

https://github.com/arcaldwell49/superpower • Rank 6.1 • Science 59%

Simulation-Based Power Analysis

swatrunr • Rank 6.1 • Science 59%

Running SWAT projects within R

truvari • Rank 16.1 • Science 49%

Structural variant toolkit for VCFs

plip • Rank 16.1 • Science 49%

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

km3pipe • Rank 6.1 • Science 59%

Extemporary analysis framework for KM3NeT

thunder • Rank 11.1 • Science 54%

thundeR - Rapid computation and visualisation of convective parameters from rawinsonde and NWP data

opfunu • Rank 16.1 • Science 49%

A collection of Benchmark functions for numerical optimization problems

DiffEqDevTools • Rank 11.1 • Science 54%

Benchmarking, testing, and development tools for differential equations and scientific machine learning (SciML)

fake-cookbook • Rank 1.1 • Science 64%

A place to experiment with cookbook workflows

review-of-software-publication-checklist • Rank 1.1 • Science 64%

A Checklist for reviewing software publications

citation-network-analysis • Rank 1.1 • Science 64%

@stdlib/assert-has-tostringtag-support • Rank 21.1 • Science 44%

Detect native Symbol.toStringTag support.

@stdlib/assert-has-symbol-support • Rank 21.1 • Science 44%

Detect native Symbol support.

@stdlib/assert-has-uint32array-support • Rank 21.1 • Science 44%

Detect native Uint32Array support.

@stdlib/assert-has-float32array-support • Rank 21.1 • Science 44%

Detect native Float32Array support.

@stdlib/assert-has-node-buffer-support • Rank 21.1 • Science 44%

Detect native Buffer support.

@stdlib/regexp-regexp • Rank 21.1 • Science 44%

Return a regular expression to parse a regular expression string.

@stdlib/regexp-eol • Rank 21.1 • Science 44%

Return a regular expression to match a newline character sequence.

@stdlib/assert-has-int8array-support • Rank 21.1 • Science 44%

Detect native Int8Array support.

@stdlib/assert-has-int16array-support • Rank 21.1 • Science 44%

Detect native Int16Array support.

@stdlib/constants • Rank 21.1 • Science 44%

Standard library constants.

@stdlib/random • Rank 21.1 • Science 44%

Standard library generic random functions.

@stdlib/utils-property-descriptor • Rank 21.1 • Science 44%

Return a property descriptor for an object's own property.

meshoid • Rank 11.1 • Science 54%

MESHOID: MESHless Operations such as Integrals and Derivatives

MDTF-diagnostics • Rank 8.1 • Science 57%

Analysis framework and collection of process-oriented diagnostics for weather and climate simulations

MaterialNet — Peer-reviewed • Rank 6.1 • Science 59%

MaterialNet: A web-based graph explorer for materials science data - Published in JOSS (2020)

@stdlib/bench-harness • Rank 11.1 • Science 54%

Benchmark harness.

trackpy • Rank 19.1 • Science 46%

Python particle tracking toolkit

The 2DECOMP&FFT library — Peer-reviewed • Rank 6.0 • Science 59%

The 2DECOMP&FFT library: an update with new CPU/GPU capabilities - Published in JOSS (2023)

hamsci-psws • Rank 6.0 • Science 59%

Plotting data from Grape V1 receivers.

detoxify • Rank 21.0 • Science 44%

Trained models & code to predict toxic comments on all 3 Jigsaw Toxic Comment Challenges. Built using ⚡ Pytorch Lightning and 🤗 Transformers. For access to our API, please email us at contact@unitary.ai.

spinnaker-pacman • Rank 11.0 • Science 54%

Partition and Configuration Manager for SpiNNaker

icar • Rank 8.0 • Science 57%

The Intermediate Complexity Atmospheric Research model (ICAR)

find_differential_primers • Rank 6.0 • Science 59%

Code for design of diagnostic PCR primers, and metabarcoding markers.

Rdisop • Rank 16.0 • Science 49%

This is the git repository matching the Bioconductor package Rdisop: Decomposition of Isotopic Patterns

pecan-sandbox • Rank 6.0 • Science 59%

naacl2024-fun • Rank 0.0 • Science 65%

Fisher information based schedule unfreezing

PM2.5-GNN • Rank 6.0 • Science 59%

PM2.5-GNN: A Domain Knowledge Enhanced Graph Neural Network For PM2.5 Forecasting

dsm • Rank 16.0 • Science 49%

Density surface modelling for distance sampling.

pycox • Rank 19.0 • Science 46%

Survival analysis with PyTorch

SLOPE • Rank 11.0 • Science 54%

Sorted L1 Penalized Estimation

chinese-llama-alpaca-2 • Rank 11.0 • Science 54%

中文LLaMA-2 & Alpaca-2大模型二期项目 + 64K超长上下文模型 (Chinese LLaMA-2 & Alpaca-2 LLMs with 64K long context models)

birdflowr • Rank 6.0 • Science 59%

BirdFlow R Package

https://github.com/daducci/amico • Rank 16.0 • Science 49%

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

Water Systems Integrated Modelling framework, WSIMOD — Peer-reviewed • Rank 6.0 • Science 59%

Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle - Published in JOSS (2023)

kelp-o-matic • Rank 11.0 • Science 54%

Segmentation Tools for Remotely Sensed RPAS Imagery

fundiversity • Rank 10.9 • Science 54%

📦 R package to compute functional diversity indices efficiently

rigraph • Rank 10.9 • Science 54%

igraph R package

Gravity — Peer-reviewed • Rank 5.9 • Science 59%

Gravity: Estimation Methods for Gravity Models in R - Published in JOSS (2018)

https://github.com/galsim-developers/galsim • Rank 18.9 • Science 46%

The modular galaxy image simulation toolkit. Documentation:

glasses-detector • Rank 15.9 • Science 49%

Glasses detection, classification and segmentation

seedbank • Rank 10.9 • Science 54%

Manage seeds across multiple Python RNGs.

IsoplotR • Rank 15.9 • Science 49%

An alternative to Isoplot written in R

py-templateflow • Rank 5.9 • Science 59%

A python client to query TemplateFlow via pyBIDS

beamshapes — Peer-reviewed • Rank 5.9 • Science 59%

beamshapes: a Python package to generate directivity patterns for various sound source models - Published in JOSS (2022)

onstove • Rank 5.9 • Science 59%

This repository contain the general code for the Open Source Spatial Clean Cooking Tool OnStove

Surfaxe — Peer-reviewed • Rank 5.9 • Science 59%

Surfaxe: Systematic surface calculations - Published in JOSS (2021)

moveHMM • Rank 15.9 • Science 49%

R package - Animal movement modelling using hidden Markov models

frame-semantic-transformer • Rank 10.9 • Science 54%

Frame Semantic Parser based on T5 and FrameNet

GLCMTextures • Rank 10.9 • Science 54%

This R package calculates the most common gray-level co-occurrence matrix (GLCM) texture metrics used for spatial analysis on raster data.

ethicml • Rank 10.9 • Science 54%

Package for evaluating the performance of methods which aim to increase fairness, accountability and/or transparency