premise • Rank 15.6 • Science 49%

Coupling Integrated Assessment Models output with Life Cycle Assessment.

hyr-sense • Rank 5.6 • Science 59%

NASA-SBG and NSF-ESIIL "HYR-SENSE: Hyperspectral and Thermal Remote Sensing for Environmental Justice" program. Participants will gain hands-on experience with hyperspectral and thermal imaging remote sensing technology and its applications for environmental justice issues.

origami — Peer-reviewed • Rank 5.6 • Science 59%

origami: A Generalized Framework for Cross-Validation in R - Published in JOSS (2018)

https://github.com/dipterix/threebrain • Rank 15.6 • Science 49%

3D Visualization of Brain MRI

rfpimp • Rank 18.6 • Science 46%

Code to compute permutation and drop-column importances in Python scikit-learn models

airguard • Rank 10.6 • Science 54%

Protect yourself from being tracked 🌍 by AirTags 🏷 and Find My accessories 📍

maml • Rank 15.6 • Science 49%

Python for Materials Machine Learning, Materials Descriptors, Machine Learning Force Fields, Deep Learning, etc.

iucnn • Rank 5.6 • Science 59%

Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of "Not Evaluated" species, for any taxon or geographic region of interest. https://iucnn.github.io/IUCNN/

https://github.com/cytoscape/cytoscape-web • Rank 5.6 • Science 59%

A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.

GigaSOM • Rank 7.6 • Science 57%

Huge-scale, high-performance flow cytometry clustering in Julia

hypeR • Rank 15.6 • Science 49%

An R Package for Geneset Enrichment Workflows

stumpless • Rank 10.6 • Science 54%

a fast and feature-rich logging library for C

libminizinc • Rank 10.6 • Science 54%

The MiniZinc compiler

mst-himalaya • Rank 5.6 • Science 59%

Assessing the Shyft Modelling Framework in Nepal: Impact of Snow Routines and Terrain Representation on Simulated Water Balance Components

profit • Rank 10.6 • Science 54%

Probabilistic Response mOdel Fitting with Interactive Tools

pdrtpy • Rank 10.6 • Science 54%

PhotoDissociation Region Toolbox Python module

omnipath • Rank 15.6 • Science 49%

Python client for the OmniPath web service

fronts • Rank 7.6 • Science 57%

Numerical library for nonlinear diffusion problems in semi-infinite domains

paperscraper • Rank 15.6 • Science 49%

Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

austraits • Rank 5.6 • Science 59%

R package for accessing the AusTraits Plant database and working with traits.build databases

oss-fuzz-gen • Rank 10.6 • Science 54%

LLM powered fuzzing via OSS-Fuzz.

multilspy • Rank 18.6 • Science 46%

multilspy is a lsp client library in Python intended to be used to build applications around language servers.

lpirfs • Rank 15.6 • Science 49%

mets • Rank 15.6 • Science 49%

Analysis of Multivariate Event Times https://kkholst.github.io/mets/

misas • Rank 7.5 • Science 57%

Model Interpretation through Sensitivity Analysis for Segmentation

py-cnvkit • Rank 10.5 • Science 54%

Copy number variant detection from targeted DNA sequencing

Taweret — Peer-reviewed • Rank 5.5 • Science 59%

Taweret: a Python package for Bayesian model mixing - Published in JOSS (2024)

maestro • Rank 10.5 • Science 54%

streamline the fine-tuning process for multimodal models: PaliGemma 2, Florence-2, and Qwen2.5-VL

gcclassic • Rank 5.5 • Science 59%

This repository contains the "superproject" wrapper for the "Classic" configuration of the GEOS-Chem model of atmospheric chemistry and composition.

solana-agent-kit • Rank 20.5 • Science 44%

connect any ai agents to solana protocols

PopMedNet — Peer-reviewed • Rank 5.5 • Science 59%

PopMedNet: A scalable and extensible open-source informatics platform designed to facilitate the implementation and operation of distributed health data networks - Published in JOSS (2022)

colomoto-docker • Rank 5.5 • Science 59%

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

careless • Rank 5.5 • Science 59%

Merge X-ray diffraction data with Wilson's priors, variational inference, and metadata

extra-set • Rank 10.5 • Science 54%

A pack of functions for working with Sets.

spinnmachine • Rank 10.5 • Science 54%

A python module which contains a representation of the SpiNNaker Machine

fathomnet • Rank 10.5 • Science 54%

FathomNet Python client

DeconvOptim • Rank 7.5 • Science 57%

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

rdbunit • Rank 7.5 • Science 57%

Unit testing for SQL queries

fgivenx — Peer-reviewed • Rank 5.5 • Science 59%

fgivenx: A Python package for functional posterior plotting - Published in JOSS (2018)

scp • Rank 15.5 • Science 49%

Single cell proteomics data processing

https://github.com/broadinstitute/ssgsea2.0 • Rank 7.5 • Science 57%

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

daedalus.api • Rank 2.5 • Science 62%

[UNDER DEVELOPMENT] API server for the DAEDALUS model via the R package {daedalus}

llmebench • Rank 10.5 • Science 54%

Benchmarking Large Language Models

impactx • Rank 15.5 • Science 49%

high-performance modeling of beam dynamics in particle accelerators with collective effects

tree-detection-framework • Rank 5.5 • Science 59%

pdd • Rank 20.5 • Science 44%

Command line toolkit for collecting TODO markers from your code, known as Puzzle Driven Development (PDD)

@stdlib/nlp-porter-stemmer • Rank 7.5 • Science 57%

Extract the stem of a given word.

openresearchcalendar.github.io • Rank 5.5 • Science 59%

Documentation & Code for the community tool: 'Open Research Calendar'

sl_sensor • Rank 5.4 • Science 59%

SL Sensor: An open-source, real-time and ROS-based structured light sensor for high accuracy construction robotic applications

GDINA • Rank 15.4 • Science 49%

GDINA

transformer-srl • Rank 10.4 • Science 54%

Reimplementation of a BERT based model (Shi et al, 2019), currently the state-of-the-art for English SRL. This model implements also predicate disambiguation.

glycresoft • Rank 7.4 • Science 57%

An LC-MS/MS glycan and glycopeptide search engine

hic • Rank 7.4 • Science 57%

Analysis of Chromosome Conformation Capture data (Hi-C)

libspatialindex • Rank 10.4 • Science 54%

C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API

datalad-gooey • Rank 10.4 • Science 54%

A graphical user interface for DataLad (datalad.org)

beep • Rank 15.4 • Science 49%

Battery evaluation and early prediction

monaLisa • Rank 15.4 • Science 49%

binned motif enrichment analysis and visualisation

sccomp • Rank 15.4 • Science 49%

Mixed-effect model to test differences in cell type proportions from single-cell data, in R

IntervalArithmetic • Rank 18.4 • Science 46%

Library for validated numerics using interval arithmetic

diffjpeg-jax • Rank 10.4 • Science 54%

Official and maintained implementation of the paper "Differentiable JPEG: The Devil is in the Details" (WACV 2024)

carps • Rank 10.4 • Science 54%

A Framework for Comparing N Hyperparameter Optimizers on M Benchmarks.

@extra-object/compare • Rank 10.4 • Science 54%

A collection of methods for working with Objects.

https://github.com/chaoss/grimoirelab-perceval • Rank 18.4 • Science 46%

Send Sir Perceval on a quest to retrieve and gather data from software repositories.

memes • Rank 15.4 • Science 49%

An R interface to the MEME Suite

ncopt • Rank 7.4 • Science 57%

Constrained optimization for Pytorch using the SQP-GS algorithm

spotpy • Rank 18.4 • Science 46%

A Statistical Parameter Optimization Tool

amerifluxr • Rank 15.4 • Science 49%

An R programmatic interface for AmeriFlux data and metadata

ml-visuals • Rank 10.4 • Science 54%

🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.

treetools • Rank 5.3 • Science 59%

Create, modify and analyse phylogenetic trees in R

python-ecology-lesson • Rank 10.3 • Science 54%

Data Analysis and Visualization in Python for Ecologists

SimInf • Rank 15.3 • Science 49%

A framework for data-driven stochastic disease spread simulations

syria-economic-monitor • Rank 5.3 • Science 59%

Support for the Syria Economic Monitor

Multiphonon — Peer-reviewed • Rank 5.3 • Science 59%

Multiphonon: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data - Published in JOSS (2018)

ural • Rank 15.3 • Science 49%

A helper library full of URL-related heuristics.

bfsl • Rank 7.3 • Science 57%

Best-fit straight line of bivariate data with errors in both coordinates.

Adeft — Peer-reviewed • Rank 5.3 • Science 59%

Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature - Published in JOSS (2020)

gval • Rank 10.3 • Science 54%

A high-level Python framework to evaluate the skill of geospatial datasets by comparing candidates to benchmark maps producing agreement maps and metrics.

backbone • Rank 15.3 • Science 49%

R backbone package - Extract the backbone from weighted and unweighted networks

help2man • Rank 10.3 • Science 54%

Convert --help and --version to man page.

tact • Rank 7.3 • Science 57%

Taxonomy addition for complete trees

gips-examples • Rank 2.3 • Science 62%

Examples for the GIPS framework.

aniMotum • Rank 5.3 • Science 59%

fit latent variable movement models to animal tracking data

Quaternionic • Rank 10.3 • Science 54%

Quaternions for Julia

ngsReports • Rank 15.3 • Science 49%

NEMO • Rank 5.3 • Science 59%

National Electricity Market Optimiser

libre-chat • Rank 10.3 • Science 54%

🦙 Free and Open Source Large Language Model (LLM) chatbot web UI and API. Self-hosted, offline capable and easy to setup.

cfs • Rank 10.3 • Science 54%

The Core Flight System (cFS)

PolSAR tools — Peer-reviewed • Rank 5.3 • Science 59%

PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)

countryinfo • Rank 20.3 • Science 44%

A python module for returning data about countries, ISO info and states/provinces within them.

sparql-llm • Rank 10.3 • Science 54%

🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

panoptic • Rank 10.3 • Science 54%

Explore and analyze large datasets of images

https://github.com/dnlbauer/WHAM • Rank 5.2 • Science 59%

An efficient, multithreaded weighted histogram analysis (WHAM) implementation for the post-processing of umbrella MD simulations.

chromatographr • Rank 15.2 • Science 49%

Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

https://github.com/becksteinlab/propkatraj • Rank 10.2 • Science 54%

pKa estimates for proteins using an ensemble approach

thoraxe • Rank 7.2 • Science 57%

Use Thor's Axe to cut exons into their evolutionary building blocks :zap:

https://github.com/benchmark-urbanism/cityseer-api • Rank 15.2 • Science 49%

Computational tools for urban analysis

https://github.com/theochem/iodata • Rank 15.2 • Science 49%

Python library for reading, writing, and converting computational chemistry file formats and generating input files.

qkeras • Rank 18.2 • Science 46%

QKeras: a quantization deep learning library for Tensorflow Keras

qtl • Rank 18.2 • Science 46%

R/qtl: A QTL mapping environment

llm-lct-sequencing • Rank 2.2 • Science 62%

AI Semantic Insights: LLM Toolkit for Analysing Educational Practices and Knowledge Building.