GitHub

https://github.com

Updated 11 months ago

netpd-lab-site • Science 44%

Updated 11 months ago

tlomodel • Science 75%

Epidemiology modelling framework for the Thanzi la Onse project

Updated 11 months ago

swigex0 • Science 49%

Updated 11 months ago

mgnaturephotos • Science 44%

Photos of nature taken in 2023 and 2024 in rural Rose Hill, Iowa.

Updated 11 months ago

ncei.jl • Science 77%

Interface for the National Centers for Environmental Information (NCEI) API

Updated 9 months ago

https://github.com/erictleung/jamia-markdown-template • Science 13%

:closed_book: Unofficial Journal of American Medical Informatics Association (JAMIA) Markdown Journal Article Template

Updated 11 months ago

oqtopus-cloud • Science 67%

Open Quantum Toolchain for OPerators & USers (OQTOPUS) is a project that provides the architecture of cloud quantum computers as an open-source software (OSS).

Scientific Software
Updated 11 months ago

gamut — Peer-reviewed • Science 98%

gamut: A Geospatial R Package to Analyze Multisectoral Urban Teleconnections - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 11 months ago

openpdac-13 • Science 67%

Updated 11 months ago

grapemr.jl • Science 44%

Gradient Ascent Pulse Engineering

Updated 11 months ago

dts-typescript • Science 44%

Distributed Text Services (DTS) API for the TEI/XML files available in the Kouigenji Monogatari Text DB

Updated 11 months ago

rhea-fingerprints • Science 67%

Automatically generate differential reaction fingerprints on reactions in Rhea

Updated 11 months ago

irdc-ccsk • Science 65%

Java implementation of distributed reversible computation verification

Updated 11 months ago

cvx-package-template • Science 44%

Python package template for cvxpy extensions.

Updated 11 months ago

gemelos-digitales-leyes-de-crecimiento-exponencial-21212142_-banuelos- • Science 57%

Practica 1- Leyes de crecimiento exponencial[21212142 Bañuelos]

Updated 11 months ago

qualo • Science 67%

Qualification Ontology

Updated 11 months ago

ocean_intella • Science 54%

Open source software for offshore pipelaying dynamics.

Updated 11 months ago

ccbr_tobias • Science 67%

Tobias implementation for ATAC seq data.

Scientific Software
Updated 11 months ago

JASP for Audit — Peer-reviewed • Science 95%

JASP for Audit: Bayesian Tools for the Auditing Practice - Published in JOSS (2021)

Engineering
Scientific Software · Peer-reviewed
Updated 11 months ago

plagiator-bch • Science 67%

Updated 11 months ago

eit_thigh_force_estimation • Science 44%

This repository contains the work for a master’s thesis focused on predicting force during concentric knee extension using Electrical Impedance (EI) measurements.

Scientific Software
Updated 11 months ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics — Peer-reviewed • Science 98%

Bam-readcount - rapid generation of basepair-resolution sequence metrics - Published in JOSS (2022)

Biology (40%)
Scientific Software · Peer-reviewed
Updated 11 months ago

sixarm_sencha_demo_model • Science 44%

SixArm.com » Sencha » Demo » Model

Updated 11 months ago

training-catalogue • Science 67%

Training catalogue for the ExPaNDS and PaNOSC projects based on ELIXIR's Training Portal TeSS

Updated 11 months ago

rangr • Science 49%

Species range dynamics simulation toolset

Updated 11 months ago

sparcrna_viz • Science 67%

Single Cell RNA-sequencing differential expression analysis and interactive visualization service on oSparc

Updated 11 months ago

makerecipes • Science 44%

Makefile recipes

Updated 11 months ago

scikit-plots • Science 67%

An intuitive library that seamlessly adds plotting capabilities and functionality to any model objects or outputs, compatible with tools like scikit-learn, XGBoost, TensorFlow, and more.

Updated 11 months ago

mat_gemini • Science 54%

Core Matlab scripts for Gemini

Updated 11 months ago

incremental_fora • Science 54%

增量学习的多模态FoRA代码,基于YOLOv8

Updated 11 months ago

gmimtools • Science 67%

A suite of ground motion intensity measure tools.

Updated 11 months ago

sgcv-alp-km-comparison • Science 44%

SGCV ALP KM Comparison

Updated 11 months ago

kgem-in-drug-discovery • Science 67%

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

Updated 11 months ago

biol827_biological_statistics • Science 44%

Code for BIOL 827 class at UNK.

Updated 11 months ago

vepcheck • Science 44%

Nextflow pipeline to check different vep version

Updated 11 months ago

xai-kit • Science 44%

A python library developed for AI-related researches used in XAI group.

Updated 9 months ago

https://github.com/erictleung/dada2hpcpipe • Science 13%

:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

Updated 11 months ago

libthesky • Science 44%

Fortran library to compute positions of celestial bodies

Updated 11 months ago

prealnqc • Science 57%

Updated 11 months ago

encode-decode-for-directed-higher-inductive-types • Science 44%

bachelor senior thesis

Updated 11 months ago

test-swd3-2025 • Science 54%

Updated 11 months ago

relationalcoauthorship • Science 44%

Official home of Relational Co-Authorship (RCA), a writing method co-created by Ian P. Pines & Ash (2025).

Scientific Software
Updated 11 months ago

LoadProfileGenerator — Peer-reviewed • Science 98%

LoadProfileGenerator: An Agent-Based Behavior Simulation for Generating Residential Load Profiles - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Updated 11 months ago

wt_elm_new • Science 57%

adding water tagging capability to ELM

Updated 11 months ago

deepseek-v3 • Science 54%

Updated 11 months ago

qo • Science 67%

A project looking at quantum oscillations in the absence of a fermi surface.

Updated 11 months ago

goalhighlighter.ai • Science 44%

Automatically extracts goal highlights from football match videos using AI-powered ball tracking, scoreboard detection and crowd cheer analysis.

Updated 11 months ago

locod • Science 44%

Updated 11 months ago

covid-19-hospitalisierungen_in_deutschland • Science 67%

Im Datensatz 'COVID-19-Hospitalisierungen' werden die aktuellen Zahlen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - erfassten hospitalisierten COVID-19-Fälle bereitgestellt. Um den Trend der Anzahl von Hospitalisierungen und der 7-Tage-Hospitalisierungsinzidenz besser bewerten zu können, wird die berichtete Hospitalisierungsinzide...

Updated 11 months ago

livingnorwayr • Science 54%

This repository contains R functions for the Living Norway project. The LivingNorwayR package aims to simplify the sharing of ecological data making use of the DarwinCore Standards. All the functions and vignettes can be found at the website below. The package is in development and therefore you should expect rapid changes.

Updated 11 months ago

speclite • Science 67%

Lightweight utilities for working with spectroscopic data

Updated 11 months ago

xlstm-mixer • Science 54%

Updated 11 months ago

code-translator • Science 44%

Web Application for code-to-code generation

Updated 11 months ago

qole • Science 57%

An easy-to-use simulator for Quantum Circuits for JavaScript, based on Quantum Multiple-Valued Decision Diagrams.

Updated 11 months ago

omics-exercises • Science 44%

Extra materials or datasets for single-cell RNA-seq teaching

Updated 11 months ago

holmgenome • Science 44%

Updated 11 months ago

oncosharp • Science 44%

Updated 11 months ago

intelliperf • Science 67%

Automated bottleneck detection and solution orchestration

Updated 11 months ago

https://github.com/assert-kth/mokav • Science 49%

Generating difference exposing tests in Python http://arxiv.org/pdf/2406.10375

Scientific Software
Updated 11 months ago

rabpro — Peer-reviewed • Science 100%

rabpro: global watershed boundaries, river elevation profiles, and catchment statistics - Published in JOSS (2022)

Political Science
Scientific Software · Peer-reviewed
Updated 11 months ago

pyet • Science 67%

:sunflower: pyet is a Python package to estimate reference and potential evaporation.

Updated 11 months ago

2025-09-22-hida-online • Science 44%

Course website for the HIDA workshop on Shell and Git on September 22 and 23, 2025

Updated 9 months ago

https://github.com/erictleung/poofsi • Science 23%

:zap: Learn concepts from Nature Methods' series "Points of Significance"

Updated 11 months ago

bafe-net • Science 54%

Updated 11 months ago

inspire-hep • Science 44%

Fetch citations and self-excluded citations for each article

Scientific Software
Updated 11 months ago

NeuralFieldEq.jl — Peer-reviewed • Science 93%

NeuralFieldEq.jl: A flexible solver to compute Neural Field Equations in several scenarios - Published in JOSS (2022)

Updated 11 months ago

behave • Science 44%

Updated 11 months ago

normalizingflowfilters.jl • Science 44%

NormalizingFlowFilters

Scientific Software
Updated 11 months ago

Accelerating Parallel Operation for Compacting Selected Elements on GPUs — Peer-reviewed • Science 95%

Accelerating Parallel Operation for Compacting Selected Elements on GPUs - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Updated 11 months ago

vispy • Science 67%

Main repository for Vispy

Scientific Software
Updated 11 months ago

GHEtool — Peer-reviewed • Science 98%

GHEtool: An open-source tool for borefield sizing in Python - Published in JOSS (2022)

Engineering (45%) Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

btllib — Peer-reviewed • Science 98%

btllib: A C++ library with Python interface for efficient genomic sequence processing - Published in JOSS (2022)

Updated 11 months ago

ipa-2022-docs • Science 44%

IPA report/documentation for the Renuo Assessment-Assistant project

Scientific Software
Updated 11 months ago

histoc — Peer-reviewed • Science 93%

histoc: Histocompatibility analysis performed by kidney allocation systems - Published in JOSS (2022)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 11 months ago

defaultkeywordarguments.jl • Science 44%

A package to handle default keyword arguments in Julia

Updated 11 months ago

lss • Science 44%

Updated 11 months ago

driftviewer • Science 67%

Software to extract and analyze data from NOAA drifters

Updated 11 months ago

calcseadensity • Science 67%

Computes seawater density from salinity, temperature, and depth

Updated 11 months ago

gwservice • Science 57%

Docker for georeferenced web services (gwservice)

Updated 11 months ago

gstat • Science 57%

Geostatistical analysis of oceanographic and meteorological datasets

Updated 11 months ago

30678 • Science 44%

Updated 11 months ago

url-title.sh • Science 67%

Get title of a URL from its HTML.

Updated 11 months ago

tabular.gen.cluster_based • Science 44%

TNO PET Lab - Synthetic Data Generation (SDG) - Tabular - Generation - Cluster Based

Updated 11 months ago

sphingolipidsid.jl • Science 44%

Automatic identify sphingolipids through PreIS and MRM

Updated 11 months ago

birdradar • Science 44%