GitHub
posebench
Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
binder-flowr
Binder files for flowR https://github.com/flowr-analysis/flowr/wiki
obta-paper
The source code for the "Flow decomposition by optimal balance with time-averaging" (2025, Rosenau) paper.
stats-array-stdevtk
Calculate the standard deviation of an array using a one-pass textbook algorithm.
control_kuka_velocity
A ROS2 package for controlling the Kuka iiwa14 using a the serial link action server & client repositories.
object_store_tutorial
Respository with examples on how to use the JASMIN high-performance object storage
transfer-entropy-toolbox
Rewrite and extension of the research in my M.Sc. thesis for publication
collation_editor_core
This is the core of the collation editor code. It is designed to be embedded in other platforms using a services file to make the connection to the database.
exorel
A Bayesian inverse retrieval algorithm to interpret exoplanetary reflected light spectra.
shinyeducation
A website that will provide an overview of all the educational shiny apps
dna_replication_model
Toolkit for analyzing DNA replication timing, origin firing rates, and genomic stability across cell lines and chromosome regions. It includes functions for data processing and visualization for whole-genome, telomeres, centromeres, and specific genomic sites, with error analysis to highlight regions of interest.
lkgcompression
Experimental compression of the data for Looking Glass factory 3D display.
mlrl-boomer
A scikit-learn implementation of BOOMER - An Algorithm for Learning Gradient Boosted Multi-Output Rules
2025-06-04-uprrp-p
UPR Rio Piedras Software Carpentry Python Workshop - June 2025
uav_classification
Code behind "4,500 Seconds" and "15,500" Seconds. More to come
banglasenti-dataset-prep
BanglaSenti Dataset Preparation: Bangla Sentiment Analysis CSV Dataset for NLP & Machine Learning
stats-strided-dstdevpn
Calculate the standard deviation of a double-precision floating-point strided array using a two-pass algorithm.
stats-strided-dstdev
Calculate the standard deviation of a double-precision floating-point strided array.
stats-strided-sstdevch
Calculate the standard deviation of a single-precision floating-point strided array using a one-pass trial mean algorithm.
cactus-snakemake
Snakemake workflows for performing whole genome alignment with Cactus efficiently on SLURM clusters
bpftime
Userspace eBPF runtime for Observability, Network, GPU & General Extensions Framework
stats-strided-variancewd
Calculate the variance of a strided array using Welford's algorithm.
rsar
[CVPR 2025] Official implementation for the paper "RSAR: Restricted State Angle Resolver and Rotated SAR Benchmark".
stats-strided-varianceyc
Calculate the variance of a strided array using a one-pass algorithm proposed by Youngs and Cramer.
ndarray-vector-uint32
Create an unsigned 32-bit integer vector (i.e., a one-dimensional ndarray).
superpoint_transformer
Official PyTorch implementation of Superpoint Transformer introduced in [ICCV'23] "Efficient 3D Semantic Segmentation with Superpoint Transformer" and SuperCluster introduced in [3DV'24 Oral] "Scalable 3D Panoptic Segmentation As Superpoint Graph Clustering"
counterexamles-to-a-conjecture-of-faudree-and-schelp
A repository to maintian the code used to find new counterexamples to a conjecture by Faudree and Schelp
multi-ego
Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations
frontiers-quarto-extension
Enhanced Quarto extension for Frontiers journal manuscripts with Harvard citation style, featuring clickable DOI links and CSL-compatible bibliography formatting
EnergyModelsGeography
Package for extending EnergyModelsX with geographical features.
@hugoalh/djb2a
An ECMAScript (JavaScript & TypeScript) module to get the non-cryptographic hash of the data with algorithm DJB2a.
data-morph-ai
Morph an input dataset of 2D points into select shapes, while preserving the summary statistics to a given number of decimal points through simulated annealing. It is intended to be used as a teaching tool to illustrate the importance of data visualization.
tutorials-early
Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.
jpwahle.com-citations
Citation helper to display stats from Google Scholar on webpage.
fermo_core
Data processing/analysis functionality of metabolomics dashboard FERMO
sally_cpv_wh
Created for benchmarking different techniques to search for CP violation in the HWW vertex in leptonic WH production.
superpredator-or-superscary
A review and meta-analysis of the effects of human interactions on animal behaviour
array-base-symmetric-filled2d-by
Create a filled two-dimensional symmetric nested array according to a provided callback function.
reducing-programs-to-objects
LaTeX paper on how to reduce programs to EO objects
tholos
Embeds iterative scripts and its interpreter into a golang file and compiles a standalone binary, allowing for the simple and reliable inclusion of modules written in python and other languages into go applications
boeken_tauopathies
Code repository for the single-molecule evaluation of tauopathies project led by Dorothea Boeken
rewl_simulator
A general simulator for classical thermodynamical systems based on the replica-exchange Wang Landau Monte Carlo sampling algorithm.