Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library • Science 87%

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)

A Python API for OTTER • Science 87%

A Python API for OTTER - Published in JOSS (2026)

c3dr • Science 67%

Read and write C3D motion capture data in R

rydiqule • Science 75%

Rydberg Sensor Interactive Quantum Physics Module

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles • Science 87%

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)

Dyad: a binary-star dynamics and statistics library for Python • Science 87%

Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)

pyfive: A pure-Python HDF5 reader • Science 92%

pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)

r.earthworks • Science 67%

An add-on tool for computational terrain modeling in GRASS

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows • Science 87%

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows - Published in JOSS (2026)

regularizedoptimization.jl • Science 67%

Algorithms for regularized optimization

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali • Science 87%

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali - Published in JOSS (2026)

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. • Science 92%

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. - Published in JOSS (2026)

KinOpt: A Python package for chemical kinetics analysis and optimization • Science 87%

KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia • Science 87%

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia - Published in JOSS (2026)

Graphorge: An open-source forge of graph neural networks • Science 87%

Graphorge: An open-source forge of graph neural networks - Published in JOSS (2026)

tangram, an open platform for modular, real-time air traffic management research • Science 96%

tangram, an open platform for modular, real-time air traffic management research - Published in JOSS (2025)

simulist • Science 67%

An R package for simulating line lists

powerfactory-tools • Science 75%

A Python toolbox for the (external) control of DIgSILENT PowerFactory.

times_model • Science 23%

The Integrated MARKAL-EFOM System (TIMES) - a bottom-up optimization model for energy-environment systems

baysc: An R package for Bayesian survey clustering • Science 87%

baysc: An R package for Bayesian survey clustering - Published in JOSS (2026)

biodiscvr: Biomarker Discovery Using Composite Value Ratios • Science 87%

biodiscvr: Biomarker Discovery Using Composite Value Ratios - Published in JOSS (2026)

Napari-3D-Counter: A manual cell counter for napari • Science 87%

Napari-3D-Counter: A manual cell counter for napari - Published in JOSS (2026)

PySGN: A Python package for constructing synthetic geospatial networks • Science 87%

PySGN: A Python package for constructing synthetic geospatial networks - Published in JOSS (2026)

evoxels: A differentiable physics framework for voxel-based microstructure simulations • Science 87%

evoxels: A differentiable physics framework for voxel-based microstructure simulations - Published in JOSS (2026)

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions • Science 87%

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions - Published in JOSS (2026)

Tissue Data Explorer: a website template for presenting tissue sample research findings • Science 95%

Tissue Data Explorer: a website template for presenting tissue sample research findings - Published in JOSS (2026)

targene-pipeline • Science 44%

Nextflow pipeline for Targeted-Learning of genetic effects

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization • Science 87%

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization - Published in JOSS (2026)

etl-forge • Science 54%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data • Science 92%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data - Published in JOSS (2026)

rmcmc • Science 57%

Robust Markov chain Monte Carlo methods in R

datatidy24sta5069z • Science 44%

Tidy data for analysis for STA5069Z course

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data • Science 93%

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data - Published in JOSS (2025)

Chemical Recommender System: Replacement Suggestions for Small Molecules • Science 87%

Chemical Recommender System: Replacement Suggestions for Small Molecules - Published in JOSS (2026)

SpectralUnmixing • Science 44%

Spectral unmixing, oriented towards imaging spectroscopy data. Lots of flavors included.

sampling_rt_vs_rt • Science 44%

Sampling growth rates vs Rt

emgflow • Science 44%

Github repository for the EMGFlow Python package.

MatrixBandwidth • Science 44%

Fast algorithms for matrix bandwidth minimization and matrix bandwidth recognition in Julia.

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination • Science 87%

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination - Published in JOSS (2025)

molify: Molecular Structure Interface • Science 87%

molify: Molecular Structure Interface - Published in JOSS (2025)

dispersiveshallowwater.jl • Science 67%

A Julia library of structure-preserving numerical methods for dispersive wave equations

grepq — Peer-reviewed • Science 98%

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)

gibbonNetR — Peer-reviewed • Science 93%

gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data - Published in JOSS (2025)

gtexr — Peer-reviewed • Science 98%

gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)

gtk-fortran — Peer-reviewed • Science 54%

gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran - Published in JOSS (2019)

portalcasting — Peer-reviewed • Science 59%

portalcasting: Supporting automated forecasting of rodent populations - Published in JOSS (2022)

Unishox — Peer-reviewed • Science 98%

Unishox: A hybrid encoder for Short Unicode Strings - Published in JOSS (2022)

dataaimsr — Peer-reviewed • Science 93%

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform - Published in JOSS (2021)

chirps — Peer-reviewed • Science 93%

chirps: API Client for the CHIRPS Precipitation Data in R - Published in JOSS (2020)

iheatmapr — Peer-reviewed • Science 95%

iheatmapr: Interactive complex heatmaps in R - Published in JOSS (2017)

rnassqs — Peer-reviewed • Science 95%

rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API - Published in JOSS (2019)

rtweet — Peer-reviewed • Science 46%

rtweet: Collecting and analyzing Twitter data - Published in JOSS (2019)

containerit — Peer-reviewed • Science 95%

containerit: Generating Dockerfiles for reproducible research with R - Published in JOSS (2019)

mitolina — Peer-reviewed • Science 93%

mitolina: MITOchondrial LINeage Analysis - Published in JOSS (2019)

nasapower — Peer-reviewed • Science 95%

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R - Published in JOSS (2018)

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control • Science 87%

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control - Published in JOSS (2025)

442_yolov5 • Science 54%

gs-relight • Science 54%

Official Code Release for SIGGRAPH Asia 2024 Paper: GS^3: Efficient Relighting with Triple Gaussian Splatting

dict-from-g2pe • Science 67%

Create pronuciation dictionary using g2p

txt-utils • Science 67%

CLI to batch process lines of a single text file.

dict-from-pypinyin • Science 67%

open-science-tutorial • Science 49%

isaac-chrome-extension • Science 49%

Chrome Web Extension for support of the NWO ISAAC platform.

metjl.jl • Science 49%

A Julia package that provides calculation functions commonly used in meteorology

workflomics-frontend • Science 49%

Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

typepp • Science 57%

Prohibiting Type Confusion With Inline Type Information

phredsort • Science 49%

`phredsort` is a cli tool for sorting sequences in a FASTQ file by their quality scores

kenya_clews_gsa • Science 49%

Sectoral interactions and primary drivers in integrated CLEWs modeling: Insights from Kenya

stylescape-theme • Science 44%

Stylescape | Theme Template

forestiler • Science 49%

Create Image Tiles From Large Input Rasters According to a Classified Mask Vector File

ge3net • Science 49%

Inferring Continuous Population Structure Coordinates Along the Genome

yolo-sgf • Science 49%

YOLO-SGF: Lightweight network for object detection in complex infrared images based on improved YOLOv8

rxnrater • Science 57%

steady-state rate equations for enzyme-catalyzed reactions

dataset-hornet-tools • Science 44%

Repository to host the tools used to process and analyze the data for the Stratosphere CTU Hornet datasets.

redcap_survey_director • Science 67%

Directs participants through surveys as controlled by logic. Easily develop a 'flow' between your surveys and then to any external URL by configuring multiple alternative targets upon completion of any survey.

lepton • Science 67%

Lepton is an educational collection of quantum simulators designed to run on small devices.

geometrytoolbox • Science 44%

Geometry Toolbox for MATLAB

cogs • Science 54%

Convention-based Ontology Generation System

transformationtoolbox • Science 44%

MATLAB Transformation Toolbox

arcticoceanco2-grl-2024 • Science 67%

This repository hosts the code for the analysis and for producing the figures in our GRL paper on Arctic Ocean pCO2.

rgpt3 • Science 67%

Making requests from R to the GPT models

yolov8_16102023 • Science 54%

quadcopter-design-using-pid-controller • Science 67%

@stdlib/slice • Science 44%

Slice.

tenzor • Science 49%

gewtool • Science 49%

Guided elastodynamic wave dispersion in anisotropic layered plates and cylinders.

bearing • Science 44%

Spatial Computing Framework

@stdlib/array-base-flatten3d • Science 44%

Flatten a three-dimensional nested array.

tennis-ball-detection-project • Science 44%

ccaflr • Science 67%

goat • Science 57%

Geometrical optics application tool

mmdetection-xray • Science 54%

pco-si-2024-2-gps-pco-si-2024-2-gps-gps-template • Science 44%

pco-si-2024-2-gps-pco-si-2024-2-gps-GPS-Template created by GitHub Classroom

tensorguard • Science 44%

omdena-kenya-cropdisease • Science 54%

seedscheduletest • Science 44%

stats-base-dists-planck-pmf • Science 44%

Planck (discrete exponential) distribution probability mass function (PMF).

llm-math-education • Science 67%

Retrieval augmented generation for middle-school math question answering and hint generation.

cinder-docker • Science 44%

Cinder | Docker

symspell • Science 67%

SymSpell: 1 million times faster spelling correction & fuzzy search through Symmetric Delete spelling correction algorithm