GitHub
tutorials-middle
Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.
metasbt
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
stats-strided-mskrange
Calculate the range of a strided array according to a mask.
claudian_dicesvolume
Graphs and tables from the chapter "Between epic and epideictic: direct speech in Claudian’s political poems through a digital lens" (2025)
hybridize-functions-refactoring
Refactorings for optimizing imperative TensorFlow clients for greater efficiency.
xctruntimeassertions
XCTest extensions to test runtime assertions and preconditions
thunderbolt.jl
A modular shared-memory high-performance framework for multiscale cardiac multiphysics simulations.
goombay
Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.
synthetic-overhead-wind-turbines
Synthetic Overhead Images of Wind Turbines Made to Mimic California and Arizona
pypi-qiskit-connector
Qiskit connector is quantum computing SDK extension which is a helper for Qiskit runtime service that streamlines authentication, plan detection, and backend selection for quantum computing algorithms. using Qiskit connector intelligence Core.
optimizvrmsinembedd
Efficient algorithm for VRMS calculation using FFT-based velocity spectrum with down sampling, window overlap, and robust scalar selection. Designed for real-time deployment on embedded systems in Industry 4.0 condition monitoring.
monofonic
High order LPT/PPT cosmological IC generator for single resolution cosmological simulations
cessda.cmv.documentation
Contains the documentation for the CESSDA Metadata Validator (CMV).
calm-pde
Official PyTorch implementation of the CALM layers and CALM-PDE model.
sgpflowmatrices
R package containing sgpFlow coefficient matrices for sgpFlow analyses
metagenomics-shell-workbench
Preview of carpentries-lab/metagenomics-shell transitioned to use the Workbench
sort
The Self-Assessment of Organisational Readiness Tool is a self-assessment framework for organisations to evaluate and strengthen their research capabilities in healthcare practices.
genomenote
Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
python-novice-programming-gapminder
An introduction to Python for non-programmers using Gapminder data
esmbenchmarkviz
A Python package for interactive visualizations for Earth System Model evaluation and benchmarking
https://github.com/cea-metrocarac/spectroview
SPECTROview : A Tool for Spectroscopic Data Processing and Visualization.
spikingneuralnetwork
The aim of this project is to improve upon existing SNNs to make them more applicable, flexible and relevant. Can't say much more, but read here if you want to learn more: https://www.linkedin.com/pulse/bonxai-research-lab-solve-s%2525C3%2525A6b%2525C3%2525B8%3FtrackingId=Ud1ch3y8SDeKoYHXlHG1Zw%253D%253D/?trackingId=Ud1ch3y8SDeKoYHXlHG1Zw%3D%3D
compomix
A lightweight composite property calculator using Halpin-Tsai and Kelly-Tyson models for mechanical analysis of fiber-reinforced materials.
mpox-seek
A rapid pipeline for targeted and whole-genome ONT monkeypox sequencing
r-tidyverse-compact
Kompaktübersicht über Datenverarbeitung mit R tidyverse Paketen
zenodo-citation-example
Example of how to make GitHub repositories citable using Zenodo.
stats-array-stdevyc
Calculate the standard deviation of an array using a one-pass algorithm proposed by Youngs and Cramer.
ai_bio_project
This is the carpentries repository for our funded project "How to Build FAIR Domain-Specific Datasets for fine tuning/training NLP models"
cats
Cluster Analysis of Trimmed Spectrograms: framework for detection and denoising of sparse signals in time-frequency domain.
ss-nes-lesson
Training material of the software sustainability of the TDCC NES project
ml-mix
Package for ML/ML Force Mixing with Machine Learning Potentials in LAMMPS
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
cse-repo-of-advanced-computation-ml-and-systems-engineering
An independent open-access publishing archive maintained by Allan.
schema
This repo collects the descriptions of the structure and the validation constraints of tools in the railtoolkit in JSON schemas. It is, therefore, an alternative to RailML.
led-net
LED-Net: A lightweight and efficient dual-branch convolutional neural network designed to address the challenge of achieving high-performance tree branch and trunk semantic segmentation in resource-constrained mobile device environments.
cog-octpsf-simulator
Simulator of optical coherence tomography's point-spread function with aberrations.
r-python
Denetimsiz Makine Öğrenmesi Algoritmaları: R ve Python Uygulamaları Kitabındaki R ve Python kodları
@stdlib/complex-float32-base-mul
Multiply two single-precision complex floating-point numbers.
igb-fuchs
IGB-FUCHS is an Electronic Lab Notebook with a focus on fieldwork, developed at IGB Berlin.
hyperspectral_toolkit
Google Earth Engine (GEE) JavaScript-based tools for working with various hyperspectral datasets (e.g., AVIRIS, EMIT, Hyperion, PACE OCI)
dockstore-support
A collection of different projects supporting the dockstore initiative
rich_directrna
Nanopore directRNA (hopefully cDNA too ;)) workflow with many transcript reconstruction alternatives